import astropy;astropy.test() hangs under macOS #10667

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1. pllim commented on Aug 14, 2020

   

   pllim

   on Aug 14, 2020

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   Thanks for reporting this. Did you try the dev version of astropy?
2. Schamschula commented on Aug 15, 2020

   

   Schamschula

   on Aug 15, 2020

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   No. We try to stay on the release version. Generally, if there is demand, we have -devel ports, currently 5 out of 1638 python ports...
3. pllim commented on Aug 17, 2020

   

   pllim

   on Aug 17, 2020

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   Do we have a MacPorts person, @astropy/coordinators ?
4. saimn commented on Aug 17, 2020

   

   saimn

   on Aug 17, 2020

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   Could you run pytest with -v to see which test is stuck ?
5. dhomeier commented on Aug 17, 2020

   

   dhomeier

   on Aug 17, 2020

   Last edited by dhomeier

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   Seems Github is sometimes swallowing my comments as well...

   From the progress bar it looks like this it failing in test_no_header, but could you run with astropy.test(package='io.ascii', args='-vk c_reader') to confirm?
6. Schamschula commented on Aug 17, 2020

   

   Schamschula

   on Aug 17, 2020

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   Indeed:

   astropy.test(package='io.ascii', args='-vk c_reader')
   ==================================================================================================================================================== test session starts =====================================================================================================================================================
   platform darwin -- Python 3.8.5, pytest-6.0.1, py-1.9.0, pluggy-0.13.1 -- /opt/local/Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8
   cachedir: .pytest_cache

   Running tests with Astropy version 4.0.1.post1.
   Running tests in /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/astropy/io/ascii.

   Date: 2020-08-17T18:57:15

   Platform: macOS-10.14.6-x86_64-i386-64bit

   Executable: /opt/local/Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8

   Full Python Version:
   3.8.5 (default, Jul 21 2020, 18:31:53)
   [Clang 10.0.1 (clang-1001.0.46.4)]

   encodings: sys: utf-8, locale: UTF-8, filesystem: utf-8
   byteorder: little
   float info: dig: 15, mant_dig: 15

   Package versions:
   Numpy: 1.19.1
   Scipy: 1.5.2
   Matplotlib: 3.3.0
   h5py: 2.10.0
   Pandas: 1.1.0
   Cython: 0.29.21
   Scikit-image: 0.17.2
   asdf: not available
   astropy-helpers: 4.0.1

   Using Astropy options: remote_data: none.

   hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/Users/marius/Development/MacPorts/ports/.hypothesis/examples')
   rootdir: /opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/astropy/io/ascii
   plugins: cov-2.10.0, arraydiff-0.3, astropy-header-0.1.2, mock-3.2.0, hypothesis-5.23.8, remotedata-0.3.2, openfiles-0.5.0, filter-subpackage-0.1.1, xonsh-0.9.19, doctestplus-0.8.0
   collecting ... collected 532 items / 393 deselected / 139 selected

   ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/astropy/io/ascii/tests/test_c_reader.py::test_simple_data[True] PASSED [ 0%]
   ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/astropy/io/ascii/tests/test_c_reader.py::test_simple_data[False] PASSED [ 1%]
   ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/astropy/io/ascii/tests/test_c_reader.py::test_read_types PASSED [ 2%]
   ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/astropy/io/ascii/tests/test_c_reader.py::test_supplied_names[True] PASSED [ 2%]
   ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/astropy/io/ascii/tests/test_c_reader.py::test_supplied_names[False] PASSED [ 3%]
   ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/astropy/io/ascii/tests/test_c_reader.py::test_no_header[True]
7. dhomeier commented on Aug 18, 2020

   

   dhomeier

   on Aug 18, 2020

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   Have you noticed any other problems with your pytest installation when running in parallel mode? Wondering since that test is the first to force a ValueError, and parallel=True has been observed to run into problems on some systems.
   You should be able to mark the parallel runs as xfail by launching the tests session with TRAVIS=1 set in your environment, although I am not sure if pytest.xfail will help in case of a hanging test.
8. saimn commented on Aug 18, 2020

   

   saimn

   on Aug 18, 2020

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   I think this issue should be transfered to the main astropy repo. There were some issues with the parallel on Python 3.8 and MacOS, because Python 3.8 changed the default multiprocessing method on MacOS: #8851 #8853
   And there is still a performance issue: #9864
   However on Python 3.7 (https://trac.macports.org/ticket/58332) you should not have this issue, so there may be something else.
9. dhomeier commented on Aug 18, 2020

   

   dhomeier

   on Aug 18, 2020

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   Agreed, though the exception the test is trying to trigger is a really basic check at the Python level in FastBasic.__init__ and has not changed in a long time, so I still suspect some pytest-specific problems may be involved.
10. pllim

    transferred this issue fromastropy/pytest-astropyon Aug 18, 2020
11. pllim

    added

    Mac OSX

    testing

    Bug

    io.ascii

    on Aug 18, 2020
12. eerovaher commented on Sep 6, 2024

    

    eerovaher

    on Sep 6, 2024

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    Could any macOS users check if this issue is still relevant?
13. Schamschula commented on Sep 6, 2024

    

    Schamschula

    on Sep 6, 2024

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    I haven't tested this in a while.

    Currently, MacPorts is stuck @ astropy 6.0.1, as updating numpy to version 2.0.x is not an option due the lack backwards compatibility. See: https://trac.macports.org/ticket/70251
14. neutrinoceros commented on Sep 6, 2024

    

    neutrinoceros

    on Sep 6, 2024

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    @Schamschula FWIW Astropy 6.1.3 is still compatible with numpy 1.x
15. Schamschula commented on Sep 6, 2024

    

    Schamschula

    on Sep 6, 2024

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    Well, I just installed py311-astropy 6.0.1 and the necessary test packages.

    The test hangs for a bit @

    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/ascii/tests/test_c_reader.py .............................................x...............................x.......x.x.................

    but continues. I now get a clean exit code:

    Python 3.11.9 (main, Apr  3 2024, 23:19:16) [Clang 15.0.0 (clang-1500.1.0.2.5)]
    Type 'copyright', 'credits' or 'license' for more information
    IPython 8.21.0 -- An enhanced Interactive Python. Type '?' for help.
    
    In [1]: import astropy;astropy.test()
    =========================================================================================================================================================================== test session starts ============================================================================================================================================================================
    platform darwin -- Python 3.11.9, pytest-7.4.3, pluggy-1.5.0
    
    Running tests with Astropy version 6.0.1.
    Running tests in /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy.
    
    Date: 2024-09-06T13:12:33
    
    Platform: macOS-14.6.1-arm64-arm-64bit
    
    Executable: /opt/local/Library/Frameworks/Python.framework/Versions/3.11/bin/python3.11
    
    Full Python Version: 
    3.11.9 (main, Apr  3 2024, 23:19:16) [Clang 15.0.0 (clang-1500.1.0.2.5)]
    
    encodings: sys: utf-8, locale: UTF-8, filesystem: utf-8
    byteorder: little
    float info: dig: 15, mant_dig: 15
    
    Package versions: 
    Numpy: 1.26.4
    Scipy: 1.11.4
    Matplotlib: 3.8.4
    h5py: 3.11.0
    Pandas: 2.2.2
    PyERFA: 2.0.1.4
    Cython: 3.0.11
    Scikit-image: 0.22.0
    asdf-astropy: 0.6.1
    
    Using Astropy options: remote_data: none.
    
    rootdir: /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy
    plugins: remotedata-0.4.1, doctestplus-1.2.1, hypothesis-6.103.2, astropy-header-0.2.2, anyio-4.4.0, asdf-3.4.0
    collected 28153 items / 4 skipped                                                                                                                                                                                                                                                                                                                                          
    
    ...
    Skipping the detailed test output
    ...
    
    ============================================================================================================================================================================= warnings summary =============================================================================================================================================================================
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/_pytest/config/__init__.py:1204
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/_pytest/config/__init__.py:1204: PytestAssertRewriteWarning: Module already imported so cannot be rewritten: asdf
        self._mark_plugins_for_rewrite(hook)
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/convolution/tests/test_discretize.py:121
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/convolution/tests/test_discretize.py:121: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/coordinates/tests/test_spectral_coordinate.py:1057
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/coordinates/tests/test_spectral_coordinate.py:1057: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/ascii/tests/test_c_reader.py:1164
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/ascii/tests/test_c_reader.py:1164: PytestUnknownMarkWarning: Unknown pytest.mark.hugemem - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.hugemem
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/ascii/tests/test_c_reader.py:1198
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/ascii/tests/test_c_reader.py:1198: PytestUnknownMarkWarning: Unknown pytest.mark.hugemem - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.hugemem
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/tests/test_table.py:2821
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/tests/test_table.py:2821: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/tests/test_table.py:3208
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/tests/test_table.py:3208: PytestUnknownMarkWarning: Unknown pytest.mark.hugemem - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.hugemem
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/tests/test_table.py:3234
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/tests/test_table.py:3234: PytestUnknownMarkWarning: Unknown pytest.mark.hugemem - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.hugemem
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/hdu/compressed/tests/test_compressed.py:227
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/hdu/compressed/tests/test_compressed.py:227: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/tests/test_fitsdiff.py:231
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/fits/tests/test_fitsdiff.py:231: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/samp/tests/test_hub.py:28
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/samp/tests/test_hub.py:28: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/samp/tests/test_hub_script.py:22
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/samp/tests/test_hub_script.py:22: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/units/tests/test_quantity_ufuncs.py:138
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/units/tests/test_quantity_ufuncs.py:138: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/utils/tests/test_data.py:778
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/utils/tests/test_data.py:778: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/utils/tests/test_decorators.py:611
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/utils/tests/test_decorators.py:611: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/utils/tests/test_decorators.py:639
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/utils/tests/test_decorators.py:639: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.slow
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/tests/figures/helpers.py:29
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/tests/figures/helpers.py:29
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/tests/figures/helpers.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.mpl_image_compare - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
        @pytest.mark.mpl_image_compare(
    
    io/ascii/tests/test_c_reader.py: 68 warnings
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/io/ascii/fastbasic.py:131: AstropyWarning: parallel reading does not currently work, so falling back to serial reading (see https://github.com/astropy/astropy/issues/8858 for more details)
        self.engine = cparser.CParser(
    
    io/ascii/tests/test_cds_header_from_readme.py::test_description
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/units/core.py:2126: UnitsWarning: 'stat.' did not parse as cds unit: At col 0, Unit 'stat' not supported by the CDS SAC standard.  If this is meant to be a custom unit, define it with 'u.def_unit'. To have it recognized inside a file reader or other code, enable it with 'u.add_enabled_units'. For details, see https://docs.astropy.org/en/latest/units/combining_and_defining.html
        warnings.warn(msg, UnitsWarning)
    
    nddata/tests/test_ccddata.py::test_read_wcs_not_creatable
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/wcs/wcs.py:539: FITSFixedWarning: RADECSYS= 'FK5 ' / The equatorial coordinate system 
      the RADECSYS keyword is deprecated, use RADESYSa.
        wcsprm = _wcs.Wcsprm(
    
    nddata/tests/test_ccddata.py::test_read_wcs_not_creatable
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/wcs/wcs.py:807: FITSFixedWarning: 'unitfix' made the change 'Changed units:
        'degree' -> 'deg'.
        warnings.warn(
    
    nddata/tests/test_ccddata.py::test_read_wcs_not_creatable
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/wcs/wcs.py:807: FITSFixedWarning: 'celfix' made the change 'Unmatched celestial axes'.
        warnings.warn(
    
    time/tests/test_comparisons.py::test_isclose_time_exceptions
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/time/core.py:2952: TimeDeltaMissingUnitWarning: Numerical value without unit or explicit format passed to TimeDelta, assuming days
        warn(
    
    time/tests/test_precision.py::test_datetime_difference_agrees_with_timedelta[utc]
    time/tests/test_precision.py::test_datetime_timedelta_sum[utc]
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/erfa/core.py:133: ErfaWarning: ERFA function "dtf2d" yielded 1 of "dubious year (Note 6)"
        warn(f'ERFA function "{func_name}" yielded {wmsg}', ErfaWarning)
    
    time/tests/test_precision.py::test_datetime_difference_agrees_with_timedelta[utc]
    time/tests/test_precision.py::test_datetime_timedelta_sum[utc]
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/erfa/core.py:133: ErfaWarning: ERFA function "utctai" yielded 1 of "dubious year (Note 3)"
        warn(f'ERFA function "{func_name}" yielded {wmsg}', ErfaWarning)
    
    time/tests/test_precision.py::test_datetime_timedelta_sum[utc]
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/erfa/core.py:133: ErfaWarning: ERFA function "taiutc" yielded 1 of "dubious year (Note 4)"
        warn(f'ERFA function "{func_name}" yielded {wmsg}', ErfaWarning)
    
    units/tests/test_quantity_ufuncs.py::TestQuantityMathFuncs::test_power_scalar_strarray
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/units/utils.py:255: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
        float(p)
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/_pytest/cacheprovider.py:451
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/_pytest/cacheprovider.py:451: PytestCacheWarning: could not create cache path /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/.pytest_cache/v/cache/nodeids: [Errno 13] Permission denied: '/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/.pytest_cache'
        config.cache.set("cache/nodeids", sorted(self.cached_nodeids))
    
    ../../../../../opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/_pytest/stepwise.py:56
      /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/_pytest/stepwise.py:56: PytestCacheWarning: could not create cache path /opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/.pytest_cache/v/cache/stepwise: [Errno 13] Permission denied: '/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/astropy/.pytest_cache'
        session.config.cache.set(STEPWISE_CACHE_DIR, [])
    
    -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
    ================================================================================================================================================= 27656 passed, 258 skipped, 243 xfailed, 99 warnings in 373.45s (0:06:13) =================================================================================================================================================
    Out[1]: <ExitCode.OK: 0>
    
    
16. Schamschula commented on Sep 6, 2024

    

    Schamschula

    on Sep 6, 2024

    Last edited by Schamschula

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    @Schamschula FWIW Astropy 6.1.3 is still compatible with numpy 1.x

    This is what I get when trying to install astropy 6.1.3 with py311-numpy @1.26.4_0+gfortran installed, i.e. w/o numpy 2.0.1:

    ports % sudo port -v install py311-astropy
    --->  Computing dependencies for py311-astropy.
    --->  Fetching distfiles for py311-astropy
    --->  Verifying checksums for py311-astropy
    --->  Checksumming astropy-6.1.3.tar.gz
    --->  Extracting py311-astropy
    --->  Extracting astropy-6.1.3.tar.gz
    Executing:  cd "/opt/local/var/macports/build/_Users_marius_Development_MacPorts_ports_python_py-astropy/py311-astropy/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/py-astropy/6.1.3/astropy-6.1.3.tar.gz' | /usr/bin/tar -xf - 
    --->  Configuring py311-astropy
    --->  Building py311-astropy
    Executing:  cd "/opt/local/var/macports/build/_Users_marius_Development_MacPorts_ports_python_py-astropy/py311-astropy/work/astropy-6.1.3" && /opt/local/Library/Frameworks/Python.framework/Versions/3.11/bin/python3.11 -m build --no-isolation --wheel --outdir /opt/local/var/macports/build/_Users_marius_Development_MacPorts_ports_python_py-astropy/py311-astropy/work 
    * Getting build dependencies for wheel...
    running egg_info
    writing astropy.egg-info/PKG-INFO
    writing dependency_links to astropy.egg-info/dependency_links.txt
    writing entry points to astropy.egg-info/entry_points.txt
    writing requirements to astropy.egg-info/requires.txt
    writing top-level names to astropy.egg-info/top_level.txt
    [09/06/24 14:18:09] ERROR    listing git files failed - pretending there aren't any                                                                                                                                                                                                                                                                                git.py:26
    reading manifest file 'astropy.egg-info/SOURCES.txt'
    reading manifest template 'MANIFEST.in'
    no previously-included directories found matching 'astropy/_dev'
    no previously-included directories found matching 'docs/_build'
    no previously-included directories found matching 'build'
    warning: no previously-included files matching '*.pyc' found anywhere in distribution
    warning: no previously-included files matching '*.o' found anywhere in distribution
    adding license file 'LICENSE.rst'
    adding license file 'licenses/AURA_LICENSE.rst'
    adding license file 'licenses/CONFIGOBJ_LICENSE.rst'
    adding license file 'licenses/DATATABLES_LICENSE.rst'
    adding license file 'licenses/ERFA.rst'
    adding license file 'licenses/EXPAT_LICENSE.rst'
    adding license file 'licenses/GATSPY_LICENSE.rst'
    adding license file 'licenses/JQUERY_LICENSE.rst'
    adding license file 'licenses/NUMPY_LICENSE.rst'
    adding license file 'licenses/PLY_LICENSE.rst'
    adding license file 'licenses/PYFITS.rst'
    adding license file 'licenses/PYTHON.rst'
    adding license file 'licenses/README.rst'
    adding license file 'licenses/WCSLIB_LICENSE.rst'
    writing manifest file 'astropy.egg-info/SOURCES.txt'
    
    ERROR Missing dependencies:
    	numpy>=2.0.0
    Command failed:  cd "/opt/local/var/macports/build/_Users_marius_Development_MacPorts_ports_python_py-astropy/py311-astropy/work/astropy-6.1.3" && /opt/local/Library/Frameworks/Python.framework/Versions/3.11/bin/python3.11 -m build --no-isolation --wheel --outdir /opt/local/var/macports/build/_Users_marius_Development_MacPorts_ports_python_py-astropy/py311-astropy/work 
    Exit code: 1
    Error: Failed to build py311-astropy: command execution failed
    Error: See /opt/local/var/macports/logs/_Users_marius_Development_MacPorts_ports_python_py-astropy/py311-astropy/main.log for details.
    Error: Follow https://guide.macports.org/#project.tickets if you believe there is a bug.
    Error: Processing of port py311-astropy failed
    
17. neutrinoceros commented on Sep 6, 2024

    

    neutrinoceros

    on Sep 6, 2024

    Last edited by neutrinoceros

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    I'm not familiar with this tool chain but it looks like what's blocking you is the build time metadata in pyproject.toml; it is not an actual requirement for downstream packagers. We only require numpy>=2.0.0 at build time for artifacts that are published on PyPI, but you should be able to compile against numpy 1.26 as long as the resulting binary isn't meant to be used with numpy 2 at runtime (which is the case here, if I understand correctly). You may need to patch pyproject.toml, but anything beyond that would be considered a bug.
18. Schamschula commented on Sep 6, 2024

    

    Schamschula

    on Sep 6, 2024

    Last edited by Schamschula

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    Sure enough! After patching the one instance of "numpy>=2.0.0" to "numpy", I got a successful install of py311-astropy 6.1.3.
    I also get a clean test output.

    It's all too common that pyproject.toml misleads packagers.

    🎉React with 🎉2Reacted by Clément Robert and P. L. Lim
19. neutrinoceros commented on Sep 6, 2024

    

    neutrinoceros

    on Sep 6, 2024

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    Awesome ! I guess we can close this now then ?

    👍React with 👍1Reacted by Marius Schamschula
20. pllim

    added

    Close?Tell stale bot that this issue/PR is staleTell stale bot that this issue/PR is stale

    on Sep 6, 2024
21. Schamschula

    closed this as completedon Sep 6, 2024