Welcome to the Apache Airavata Cerebrum repository for the Integrated Neuroscience Computational Framework. This project aims to revolutionize how we understand and model the human brain by integrating cellular-level brain atlases with advanced computational tools. Our goal is to create a cohesive, open-source framework that allows for the seamless application of existing tools within a streamlined, lightweight environment.
- Integration of Brain Atlases: Merging publicly available cellular-level brain atlases into a single, accessible platform.
- Comprehensive Modeling Tools: Incorporating computational tools designed for modeling the entire brain.
- Open-Source Framework: Developing a user-friendly, open-source environment for neuroscience research.
- Streamlined Environment: Ensuring a lightweight, efficient framework for both beginners and advanced users.
Airavata Cerebrum requires python3.10+ environment. It is currently tested only in Linux operating system. We recommend create a virtual environment using conda as below:
conda create -n cerebrum python=3.10
conda activate cerebrum
Following command will download Airavata Cerebrum into your environment.
pip3 install git+https://github.com/apache/airavata-cerebrum.git
Check the resources/notebooks folder for examples of usage.