Embryonic chromatin

Analysis of Hi-C/Micro-C data in zebrafish embryogenesis and mouse cells. Code accopmanies the work:

Extrusion fountains are hallmarks of chromosome organization emerging upon zygotic genome activation

Aleksandra Galitsyna, Sergey V. Ulianov, Mariia Bazarevich, Nikolai S. Bykov, Marina Veil, Meijiang Gao, Kristina Perevoschikova, Mikhail S. Gelfand, Sergey V. Razin, Leonid Mirny, Daria Onichtchouk

bioRxiv 2023.07.15.549120; doi: https://doi.org/10.1101/2023.07.15.549120

Updates

23-Dec-2025:

• notebooks folder updated with the code for obtaining all figures in the paper.
• scripts and environment.yml are now deprecated and not supported (will be removed as legacy code).

Source Data

Full source data will be provided with the manuscript upon publication.

Other important links for this project:

• OSF Zebrafish Embryos Hi-C data depository
• ResGen Online Project with interactive views on the data

Contact Person

Aleksandra Galitsyna agalitzina at gmail.com