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Merged
milanmlft merged 1 commit into from
Jan 7, 2026
Merged

Update 20 packages #65

milanmlft merged 1 commit into from
Jan 7, 2026

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@milanmlft milanmlft commented Jan 6, 2026

🤖 This is an automated build

This will update 20 packages in your lesson with the following versions:

# NEW OR REMOVED PACKAGES -------------------------------
- Matrix  [required by igraph]
- Matrix    [1.7-4 -> *]
- lattice   [0.22-7 -> *]
- R         [4.5.1 -> 4.5.2]

# CRAN -----------------------------------------------------------------------
- broom        [1.0.10 -> 1.0.11]
- data.table   [1.17.8 -> 1.18.0]
- digest       [repo: RSPM -> CRAN; ver: 0.6.37 -> 0.6.39]
- ggplot2      [4.0.0 -> 4.0.1]
- htmltools    [repo: RSPM -> CRAN; ver: 0.5.8.1 -> 0.5.9]
- isoband      [repo: RSPM -> CRAN; ver: 0.2.7 -> 0.3.0]
- knitr        [1.50 -> 1.51]
- purrr        [1.1.0 -> 1.2.0]
- readr        [repo: RSPM -> CRAN; ver: 2.1.5 -> 2.1.6]
- S7           [repo: RSPM -> CRAN; ver: 0.2.0 -> 0.2.1]
- selectr      [repo: RSPM -> CRAN; ver: 0.4-2 -> 0.5-1]
- stringr      [1.5.2 -> 1.6.0]
- tidyr        [repo: RSPM -> CRAN; ver: 1.3.1 -> 1.3.2]
- tinytex      [0.57 -> 0.58]
- vroom        [1.6.6 -> 1.6.7]
- xfun         [0.54 -> 0.55]
- xml2         [1.4.1 -> 1.5.1]
- yaml         [repo: RSPM -> CRAN; ver: 2.3.10 -> 2.3.12]
- Matrix       [* -> 1.7-4]

# RSPM -----------------------------------------------------------------------
- lattice      [* -> 0.22-7]

⏱️ In a few minutes, a comment will appear that will show you how the output has changed based on these updates.

If you want to inspect these changes locally, you can use the following code to check out a new branch:

git fetch origin update/packages
git checkout update/packages

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github-actions bot commented Jan 6, 2026 •
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Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

  • 🎯 correct output
  • 🖼️ correct figures
  • ❓ new warnings
  • ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/UCL/ClinicianCoders/compare/md-outputs..md-outputs-PR-65

The following changes were observed in the rendered markdown documents:

 01-rstudio-intro.md                           |    5 +-
 02-project-intro.md                           |    2 +-
 03-seeking-help.md                            |    4 +-
 04-data-structures-part1.md                   |    9 +-
 05-data-structures-part2.md                   |    6 +-
 06-data-subsetting.md                         |   15 +-
 08-plot-ggplot2.md                            |   18 +-
 12-dplyr.md                                   |    6 +-
 14-knitr-markdown.md                          |    2 +-
 config.yaml (gone)                            |   93 -
 fig/statistics-rendered-unnamed-chunk-3-1.png |  Bin 3986 -> 4411 bytes
 fig/statistics-rendered-unnamed-chunk-3-2.png |  Bin 4583 -> 4261 bytes
 md5sum.txt                                    |   46 +-
 renv.lock (gone)                              | 4256 -------------------------
 statistics.md                                 |   10 +-
 15 files changed, 67 insertions(+), 4405 deletions(-)
What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2026-01-06 00:41:49 +0000

github-actions bot pushed a commit that referenced this pull request Jan 6, 2026
@actions-user
differences for PR #65
d2ee433
@milanmlft milanmlft merged commit 0bbf965 into main Jan 7, 2026
3 checks passed
@milanmlft milanmlft deleted the update/packages branch January 7, 2026 11:23
github-actions bot pushed a commit that referenced this pull request Jan 7, 2026
@actions-user
markdown source builds
6338561 
Auto-generated via `{sandpaper}`
Source  : 0bbf965
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2026-01-07 11:23:51 +0000
Message : [actions] update 20 packages (#65)
github-actions bot pushed a commit that referenced this pull request Jan 7, 2026
@actions-user
site deploy
8cc3b58 
Auto-generated via `{sandpaper}`
Source  : 6338561
Branch  : md-outputs
Author  : GitHub Actions <[email protected]>
Time    : 2026-01-07 11:29:27 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 0bbf965
Branch  : main
Author  : Milan Malfait <[email protected]>
Time    : 2026-01-07 11:23:51 +0000
Message : [actions] update 20 packages (#65)
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