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Tree generation improvements#1848

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mliu49 merged 4 commits intomasterfrom
tree_improvements
Dec 14, 2019
Merged

Tree generation improvements#1848
mliu49 merged 4 commits intomasterfrom
tree_improvements

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@mjohnson541
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Generate resonance structures before calculating thermo for tree generation training sets and add SABIC_aromatics to the thermo libraries used during tree generation.

@mjohnson541 mjohnson541 requested a review from mliu49 December 12, 2019 20:53
for j, react in enumerate(r.item.reactants):
if rxns[i].reactants[j].thermo is None:
rxns[i].reactants[j].thermo = tdb.get_thermo_data(react)
therm_spc = deepcopy(rxns[i].reactants[j])
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Does it matter if you use react or rxns[i].reactants[j]? If not, could you just loop over rxns[i].reactants?

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codecov bot commented Dec 12, 2019

Codecov Report

Merging #1848 into master will decrease coverage by <.01%.
The diff coverage is 30%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #1848      +/-   ##
==========================================
- Coverage   44.23%   44.22%   -0.01%     
==========================================
  Files          83       83              
  Lines       21539    21547       +8     
  Branches     5645     5646       +1     
==========================================
+ Hits         9527     9530       +3     
+ Misses      10956    10946      -10     
- Partials     1056     1071      +15
Impacted Files Coverage Δ
rmgpy/data/kinetics/family.py 49.02% <30%> (-0.04%) ⬇️
rmgpy/data/statmech.py 42.2% <0%> (ø) ⬆️
rmgpy/rmg/pdep.py 12.21% <0%> (ø) ⬆️
arkane/kinetics.py 12.14% <0%> (ø) ⬆️
rmgpy/statmech/ndTorsions.py 59.78% <0%> (ø) ⬆️
rmgpy/yml.py 15.71% <0%> (ø) ⬆️
arkane/sensitivity.py 10% <0%> (ø) ⬆️
rmgpy/data/kinetics/database.py 50.61% <0%> (ø) ⬆️

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@mliu49 mliu49 merged commit fe25b90 into master Dec 14, 2019
@mliu49 mliu49 deleted the tree_improvements branch December 14, 2019 02:22
This was referenced Dec 16, 2019
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2 participants