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change to is.atomic() causes 1962.0473, 2040.1, 2040.2 to fail on CRAN #5694

@jangorecki

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@jangorecki

Change to R-devel went live and we started to fail on CRAN.
Three tests 1962.0473, 2040.1, 2040.2 are affected by change to is.atomic().
Fix has been already provided in #5691

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