snakefile: move copy_default_files and process_run_config to helpers#978
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FabianHofmann merged 7 commits intomasterfrom Mar 20, 2024
Merged
snakefile: move copy_default_files and process_run_config to helpers#978FabianHofmann merged 7 commits intomasterfrom
FabianHofmann merged 7 commits intomasterfrom
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fneum
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Mar 19, 2024
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annoying, it all works but does not resolve the original problem with the indentation error on windows machines... still we can merge this |
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I really don't know what's wrong with these windows machines... For a temporal fix, I removed windows from the CI requirement list. l |
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In the current master, the CI on windows fails due to some weird syntax error (probably something wrong in snakemake >= 8, but hard to track). Took the opportunity and moved some snippets from the Snakefile header into dedicated functions.