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snakefile: allow to share resources in directory#906

Merged
fneum merged 7 commits intomasterfrom
encapsulate-resource-dir
Feb 5, 2024
Merged

snakefile: allow to share resources in directory#906
fneum merged 7 commits intomasterfrom
encapsulate-resource-dir

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@FabianHofmann
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@FabianHofmann FabianHofmann commented Jan 31, 2024

CI: use test.sh script which can be executed locally

With this change, it should be faster and safer to run tests locally. By running

bash test.sh

or

./test.sh

you can run the same workflow as the CI on github. The test runs are using an encapsulated directory for the resources which does not interfere with the default resources. Therefore, it is easy to switch between low (i.e. in tests) and high (default) network resolution.

Closes #905

Changes proposed in this Pull Request

Checklist

  • I tested my contribution locally and it seems to work fine.
  • Code and workflow changes are sufficiently documented.
  • Changed dependencies are added to envs/environment.yaml.
  • Changes in configuration options are added in all of config.default.yaml.
  • Changes in configuration options are also documented in doc/configtables/*.csv.
  • A release note doc/release_notes.rst is added.

@FabianHofmann FabianHofmann marked this pull request as ready for review January 31, 2024 16:13
@FabianHofmann FabianHofmann requested a review from fneum February 1, 2024 08:28
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Quite a few deprecation warnings addressed, too.

@fneum fneum enabled auto-merge February 5, 2024 07:22
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fneum commented Feb 5, 2024

Sorry, plot_hydrogen_network.py needs the foresight param....

@fneum fneum merged commit 3198d8b into master Feb 5, 2024
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Allow shared resources in dedicated folder

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