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Move all rule to main Snakefile#741

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fneum merged 1 commit intomasterfrom
fix-all-rule
Sep 21, 2023
Merged

Move all rule to main Snakefile#741
fneum merged 1 commit intomasterfrom
fix-all-rule

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@chrstphtrs
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@chrstphtrs chrstphtrs requested a review from fneum September 20, 2023 17:36
@fneum fneum merged commit 0d2aac5 into master Sep 21, 2023
@fneum fneum deleted the fix-all-rule branch September 21, 2023 07:30
@FabianHofmann
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We could even move rule all down to the other rules or?

@fneum
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fneum commented Sep 21, 2023

You mean before rule purge? Yes. One would just have to check if snakemake -j8 would still trigger the all rule, or if it would go into one of the include: ... files

@coroa
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coroa commented Sep 21, 2023

snakemake triggers the first rule by default, the name all is convention.
(first rule after inlining all the included files) EDIT: Indeed, included files are ignored: modularization docs.

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chrstphtrs commented Sep 21, 2023 via email

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4 participants