Update tumor detection pipline with new components#697
Merged
Nic-Ma merged 34 commits intoProject-MONAI:mainfrom Jul 20, 2022
Merged
Update tumor detection pipline with new components#697Nic-Ma merged 34 commits intoProject-MONAI:mainfrom
Nic-Ma merged 34 commits intoProject-MONAI:mainfrom
Conversation
Signed-off-by: Behrooz <[email protected]>
5 tasks
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Contributor
|
Hi @drbeh , Do you also need to update the code under Thanks. |
Member
Author
Hey @Nic-Ma, yes of course. All the tumor detection tutorials need to be updated. |
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
|
Check out this pull request on See visual diffs & provide feedback on Jupyter Notebooks. Powered by ReviewNB |
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
This was
linked to
issues
May 16, 2022
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Member
Author
|
@Nic-Ma this pipeline is already tested by @ZiyueXu77 and FROC is maintained (~0.7). |
Contributor
|
Hi @drbeh , Could you please help remove the 2 CSV files from the PR? It makes the PR around 200000 lines change. Thanks. |
Signed-off-by: Behrooz <[email protected]>
Member
Author
Hi @Nic-Ma, |
boneseva
pushed a commit
to boneseva/MONAI-tutorials
that referenced
this pull request
Apr 21, 2024
* Update tumor detection pipline with new components Signed-off-by: Behrooz <[email protected]> * formatting Signed-off-by: Behrooz <[email protected]> * formatting Signed-off-by: Behrooz <[email protected]> * Add sub dataset Signed-off-by: Behrooz <[email protected]> * Convert xxxD transforms to xxxd Signed-off-by: Behrooz <[email protected]> * Update pipline with nvtx annotation Signed-off-by: Behrooz <[email protected]> * Add transforms to validation Signed-off-by: Behrooz <[email protected]> * Update tumor notebook Signed-off-by: Behrooz <[email protected]> * Update torch-based pipeline Signed-off-by: Behrooz <[email protected]> * Update perfomance profiling code Signed-off-by: Behrooz <[email protected]> * Update grid shape Signed-off-by: Behrooz <[email protected]> * Update Signed-off-by: Behrooz <[email protected]> * Update a comment Signed-off-by: Behrooz <[email protected]> * Update training/validation dataset and their links Signed-off-by: Behrooz <[email protected]> * Fix image path Signed-off-by: Behrooz <[email protected]> * Change to validate by default Signed-off-by: Behrooz <[email protected]> * Flip back the location dims Signed-off-by: Behrooz <[email protected]> * Add filtered datasets Signed-off-by: Behrooz <[email protected]> * Update csv loading Signed-off-by: Behrooz <[email protected]> * Update validation defaults Signed-off-by: Behrooz <[email protected]> * Remove csv files Signed-off-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Fixes #636
Description
Updates the ignite-based tumor detection pipeline that uses numpy and pytorch tensors with the new components in MONAI.
Status
Ready
Checks
./runner [-p <regex_pattern>]