Add visualization tutorial transform image #448
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Signed-off-by: Nic Ma <[email protected]>
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Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
This was referenced Nov 19, 2021
Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
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looks good to me. this notebook is 2.8 megabytes, is it possible to make it smaller?
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Hi @wyli , I think maybe that because this notebook contains many images? like these notebooks are big: Thanks. |
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thanks @Nic-Ma. I guess we could have used the Resample function to downsample the images to decrease the size of this notebook. |
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* initialize dints tutorials Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update README.md * Update README.md * update scripts Signed-off-by: dongy <[email protected]> * Change Dints interface * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Modify scripts for new Dints interface * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Test push * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update readme Signed-off-by: Dong Yang <[email protected]> * Add readme * Update readme * Change lr in search * update readme Signed-off-by: Dong Yang <[email protected]> * Enable single GPU * update readme Signed-off-by: Dong Yang <[email protected]> * Add visualization tutorial transform image (#448) * [DLMED] add visualization tutorial Signed-off-by: Nic Ma <[email protected]> * [DLMED] add image Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference image Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix PEP error Signed-off-by: Nic Ma <[email protected]> * Update spleen_segmentation_3d.ipynb (#455) The `pip install` statement is missing pytorch-ignite. Changing: `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm]"` to `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm, ignite]"` * Figures added, pretrained weights link added, minor fixes (#456) * Figures added, pretrained weights link added, minor fixes Signed-off-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: vnath <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add itkwidgets example in notebook (#454) * [DLMED] add itkwidgets Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference screenshot Signed-off-by: Nic Ma <[email protected]> * [DLMED] update to PLS orientation Signed-off-by: Nic Ma <[email protected]> * MIL example (#431) * MIL example Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * small updates Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated images Signed-off-by: myron <[email protected]> * gdown for json Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README Signed-off-by: Behrooz <[email protected]> * Fix formatting and typos Signed-off-by: Behrooz <[email protected]> * small fixes Signed-off-by: myron <[email protected]> * stats Signed-off-by: myron <[email protected]> * pip install Signed-off-by: myron <[email protected]> * README fixes Signed-off-by: myron <[email protected]> Co-authored-by: am <am> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]> * 450 update AsDiscrete (#451) * update asdiscrete Signed-off-by: Yiheng Wang <[email protected]> * update postprocessing figures Signed-off-by: Yiheng Wang <[email protected]> * fix version error of mutual info Signed-off-by: Yiheng Wang <[email protected]> * update to use include in torchin Signed-off-by: Yiheng Wang <[email protected]> * 459 update nvidia flare 2.0 example (#460) * update nvidia flare 2.0 example Signed-off-by: Yiheng Wang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * enhance code format Signed-off-by: Yiheng Wang <[email protected]> * update folder and readme Signed-off-by: Yiheng Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Weights Link Updated (#465) Signed-off-by: vnath <[email protected]> Co-authored-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixes readme typos Signed-off-by: Wenqi Li <[email protected]> * update readmes Signed-off-by: Wenqi Li <[email protected]> * update readme Signed-off-by: Wenqi Li <[email protected]> * qa commit Signed-off-by: Wenqi Li <[email protected]> * link Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: dongy <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: heyufan1995 <[email protected]> Co-authored-by: Dong Yang <[email protected]> Co-authored-by: Nic Ma <[email protected]> Co-authored-by: nvahmadi <[email protected]> Co-authored-by: Vishwesh <[email protected]> Co-authored-by: vnath <[email protected]> Co-authored-by: myron <[email protected]> Co-authored-by: Behrooz <[email protected]> Co-authored-by: Yiheng Wang <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
wyli
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* initialize dints tutorials Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update README.md * Update README.md * update scripts Signed-off-by: dongy <[email protected]> * Change Dints interface * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Modify scripts for new Dints interface * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Test push * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update readme Signed-off-by: Dong Yang <[email protected]> * Add readme * Update readme * Change lr in search * update readme Signed-off-by: Dong Yang <[email protected]> * Enable single GPU * update readme Signed-off-by: Dong Yang <[email protected]> * Add visualization tutorial transform image (#448) * [DLMED] add visualization tutorial Signed-off-by: Nic Ma <[email protected]> * [DLMED] add image Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference image Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix PEP error Signed-off-by: Nic Ma <[email protected]> * Update spleen_segmentation_3d.ipynb (#455) The `pip install` statement is missing pytorch-ignite. Changing: `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm]"` to `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm, ignite]"` * Figures added, pretrained weights link added, minor fixes (#456) * Figures added, pretrained weights link added, minor fixes Signed-off-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: vnath <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add itkwidgets example in notebook (#454) * [DLMED] add itkwidgets Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference screenshot Signed-off-by: Nic Ma <[email protected]> * [DLMED] update to PLS orientation Signed-off-by: Nic Ma <[email protected]> * MIL example (#431) * MIL example Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * small updates Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated images Signed-off-by: myron <[email protected]> * gdown for json Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README Signed-off-by: Behrooz <[email protected]> * Fix formatting and typos Signed-off-by: Behrooz <[email protected]> * small fixes Signed-off-by: myron <[email protected]> * stats Signed-off-by: myron <[email protected]> * pip install Signed-off-by: myron <[email protected]> * README fixes Signed-off-by: myron <[email protected]> Co-authored-by: am <am> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]> * 450 update AsDiscrete (#451) * update asdiscrete Signed-off-by: Yiheng Wang <[email protected]> * update postprocessing figures Signed-off-by: Yiheng Wang <[email protected]> * fix version error of mutual info Signed-off-by: Yiheng Wang <[email protected]> * update to use include in torchin Signed-off-by: Yiheng Wang <[email protected]> * 459 update nvidia flare 2.0 example (#460) * update nvidia flare 2.0 example Signed-off-by: Yiheng Wang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * enhance code format Signed-off-by: Yiheng Wang <[email protected]> * update folder and readme Signed-off-by: Yiheng Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Weights Link Updated (#465) Signed-off-by: vnath <[email protected]> Co-authored-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixes readme typos Signed-off-by: Wenqi Li <[email protected]> * update readmes Signed-off-by: Wenqi Li <[email protected]> * update readme Signed-off-by: Wenqi Li <[email protected]> * qa commit Signed-off-by: Wenqi Li <[email protected]> * link Signed-off-by: Wenqi Li <[email protected]> * Add plot arch_code utils * Fix bugs in search and update readme * Fix combination weights bug * Small typo update * Fix minor bug in train_dints * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update Readme * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: dongy <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: heyufan1995 <[email protected]>
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* initialize dints tutorials Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update README.md * Update README.md * update scripts Signed-off-by: dongy <[email protected]> * Change Dints interface * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Modify scripts for new Dints interface * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Test push * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update readme Signed-off-by: Dong Yang <[email protected]> * Add readme * Update readme * Change lr in search * update readme Signed-off-by: Dong Yang <[email protected]> * Enable single GPU * update readme Signed-off-by: Dong Yang <[email protected]> * Add visualization tutorial transform image (#448) * [DLMED] add visualization tutorial Signed-off-by: Nic Ma <[email protected]> * [DLMED] add image Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference image Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix PEP error Signed-off-by: Nic Ma <[email protected]> * Update spleen_segmentation_3d.ipynb (#455) The `pip install` statement is missing pytorch-ignite. Changing: `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm]"` to `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm, ignite]"` * Figures added, pretrained weights link added, minor fixes (#456) * Figures added, pretrained weights link added, minor fixes Signed-off-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: vnath <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add itkwidgets example in notebook (#454) * [DLMED] add itkwidgets Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference screenshot Signed-off-by: Nic Ma <[email protected]> * [DLMED] update to PLS orientation Signed-off-by: Nic Ma <[email protected]> * MIL example (#431) * MIL example Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * small updates Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated images Signed-off-by: myron <[email protected]> * gdown for json Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README Signed-off-by: Behrooz <[email protected]> * Fix formatting and typos Signed-off-by: Behrooz <[email protected]> * small fixes Signed-off-by: myron <[email protected]> * stats Signed-off-by: myron <[email protected]> * pip install Signed-off-by: myron <[email protected]> * README fixes Signed-off-by: myron <[email protected]> Co-authored-by: am <am> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]> * 450 update AsDiscrete (#451) * update asdiscrete Signed-off-by: Yiheng Wang <[email protected]> * update postprocessing figures Signed-off-by: Yiheng Wang <[email protected]> * fix version error of mutual info Signed-off-by: Yiheng Wang <[email protected]> * update to use include in torchin Signed-off-by: Yiheng Wang <[email protected]> * 459 update nvidia flare 2.0 example (#460) * update nvidia flare 2.0 example Signed-off-by: Yiheng Wang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * enhance code format Signed-off-by: Yiheng Wang <[email protected]> * update folder and readme Signed-off-by: Yiheng Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Weights Link Updated (#465) Signed-off-by: vnath <[email protected]> Co-authored-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixes readme typos Signed-off-by: Wenqi Li <[email protected]> * update readmes Signed-off-by: Wenqi Li <[email protected]> * update readme Signed-off-by: Wenqi Li <[email protected]> * qa commit Signed-off-by: Wenqi Li <[email protected]> * link Signed-off-by: Wenqi Li <[email protected]> * Add plot arch_code utils * Fix bugs in search and update readme * Fix combination weights bug * Small typo update * Fix minor bug in train_dints * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update Readme * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Change arch code keys * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> Co-authored-by: dongy <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: heyufan1995 <[email protected]>
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* [DLMED] add visualization tutorial Signed-off-by: Nic Ma <[email protected]> * [DLMED] add image Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference image Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix PEP error Signed-off-by: Nic Ma <[email protected]>
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Apr 21, 2024
* initialize dints tutorials Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update README.md * Update README.md * update scripts Signed-off-by: dongy <[email protected]> * Change Dints interface * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Modify scripts for new Dints interface * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Test push * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update readme Signed-off-by: Dong Yang <[email protected]> * Add readme * Update readme * Change lr in search * update readme Signed-off-by: Dong Yang <[email protected]> * Enable single GPU * update readme Signed-off-by: Dong Yang <[email protected]> * Add visualization tutorial transform image (Project-MONAI#448) * [DLMED] add visualization tutorial Signed-off-by: Nic Ma <[email protected]> * [DLMED] add image Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference image Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix PEP error Signed-off-by: Nic Ma <[email protected]> * Update spleen_segmentation_3d.ipynb (Project-MONAI#455) The `pip install` statement is missing pytorch-ignite. Changing: `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm]"` to `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm, ignite]"` * Figures added, pretrained weights link added, minor fixes (Project-MONAI#456) * Figures added, pretrained weights link added, minor fixes Signed-off-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: vnath <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add itkwidgets example in notebook (Project-MONAI#454) * [DLMED] add itkwidgets Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference screenshot Signed-off-by: Nic Ma <[email protected]> * [DLMED] update to PLS orientation Signed-off-by: Nic Ma <[email protected]> * MIL example (Project-MONAI#431) * MIL example Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * small updates Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated images Signed-off-by: myron <[email protected]> * gdown for json Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README Signed-off-by: Behrooz <[email protected]> * Fix formatting and typos Signed-off-by: Behrooz <[email protected]> * small fixes Signed-off-by: myron <[email protected]> * stats Signed-off-by: myron <[email protected]> * pip install Signed-off-by: myron <[email protected]> * README fixes Signed-off-by: myron <[email protected]> Co-authored-by: am <am> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]> * 450 update AsDiscrete (Project-MONAI#451) * update asdiscrete Signed-off-by: Yiheng Wang <[email protected]> * update postprocessing figures Signed-off-by: Yiheng Wang <[email protected]> * fix version error of mutual info Signed-off-by: Yiheng Wang <[email protected]> * update to use include in torchin Signed-off-by: Yiheng Wang <[email protected]> * 459 update nvidia flare 2.0 example (Project-MONAI#460) * update nvidia flare 2.0 example Signed-off-by: Yiheng Wang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * enhance code format Signed-off-by: Yiheng Wang <[email protected]> * update folder and readme Signed-off-by: Yiheng Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Weights Link Updated (Project-MONAI#465) Signed-off-by: vnath <[email protected]> Co-authored-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixes readme typos Signed-off-by: Wenqi Li <[email protected]> * update readmes Signed-off-by: Wenqi Li <[email protected]> * update readme Signed-off-by: Wenqi Li <[email protected]> * qa commit Signed-off-by: Wenqi Li <[email protected]> * link Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: dongy <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: heyufan1995 <[email protected]> Co-authored-by: Dong Yang <[email protected]> Co-authored-by: Nic Ma <[email protected]> Co-authored-by: nvahmadi <[email protected]> Co-authored-by: Vishwesh <[email protected]> Co-authored-by: vnath <[email protected]> Co-authored-by: myron <[email protected]> Co-authored-by: Behrooz <[email protected]> Co-authored-by: Yiheng Wang <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
boneseva
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to boneseva/MONAI-tutorials
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this pull request
Apr 21, 2024
* initialize dints tutorials Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update README.md * Update README.md * update scripts Signed-off-by: dongy <[email protected]> * Change Dints interface * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Modify scripts for new Dints interface * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Test push * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update readme Signed-off-by: Dong Yang <[email protected]> * Add readme * Update readme * Change lr in search * update readme Signed-off-by: Dong Yang <[email protected]> * Enable single GPU * update readme Signed-off-by: Dong Yang <[email protected]> * Add visualization tutorial transform image (Project-MONAI#448) * [DLMED] add visualization tutorial Signed-off-by: Nic Ma <[email protected]> * [DLMED] add image Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference image Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix PEP error Signed-off-by: Nic Ma <[email protected]> * Update spleen_segmentation_3d.ipynb (Project-MONAI#455) The `pip install` statement is missing pytorch-ignite. Changing: `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm]"` to `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm, ignite]"` * Figures added, pretrained weights link added, minor fixes (Project-MONAI#456) * Figures added, pretrained weights link added, minor fixes Signed-off-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: vnath <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add itkwidgets example in notebook (Project-MONAI#454) * [DLMED] add itkwidgets Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference screenshot Signed-off-by: Nic Ma <[email protected]> * [DLMED] update to PLS orientation Signed-off-by: Nic Ma <[email protected]> * MIL example (Project-MONAI#431) * MIL example Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * small updates Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated images Signed-off-by: myron <[email protected]> * gdown for json Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README Signed-off-by: Behrooz <[email protected]> * Fix formatting and typos Signed-off-by: Behrooz <[email protected]> * small fixes Signed-off-by: myron <[email protected]> * stats Signed-off-by: myron <[email protected]> * pip install Signed-off-by: myron <[email protected]> * README fixes Signed-off-by: myron <[email protected]> Co-authored-by: am <am> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]> * 450 update AsDiscrete (Project-MONAI#451) * update asdiscrete Signed-off-by: Yiheng Wang <[email protected]> * update postprocessing figures Signed-off-by: Yiheng Wang <[email protected]> * fix version error of mutual info Signed-off-by: Yiheng Wang <[email protected]> * update to use include in torchin Signed-off-by: Yiheng Wang <[email protected]> * 459 update nvidia flare 2.0 example (Project-MONAI#460) * update nvidia flare 2.0 example Signed-off-by: Yiheng Wang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * enhance code format Signed-off-by: Yiheng Wang <[email protected]> * update folder and readme Signed-off-by: Yiheng Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Weights Link Updated (Project-MONAI#465) Signed-off-by: vnath <[email protected]> Co-authored-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixes readme typos Signed-off-by: Wenqi Li <[email protected]> * update readmes Signed-off-by: Wenqi Li <[email protected]> * update readme Signed-off-by: Wenqi Li <[email protected]> * qa commit Signed-off-by: Wenqi Li <[email protected]> * link Signed-off-by: Wenqi Li <[email protected]> * Add plot arch_code utils * Fix bugs in search and update readme * Fix combination weights bug * Small typo update * Fix minor bug in train_dints * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update Readme * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: dongy <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: heyufan1995 <[email protected]>
boneseva
pushed a commit
to boneseva/MONAI-tutorials
that referenced
this pull request
Apr 21, 2024
* initialize dints tutorials Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update README.md * Update README.md * update scripts Signed-off-by: dongy <[email protected]> * Change Dints interface * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Modify scripts for new Dints interface * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Test push * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update readme Signed-off-by: Dong Yang <[email protected]> * Add readme * Update readme * Change lr in search * update readme Signed-off-by: Dong Yang <[email protected]> * Enable single GPU * update readme Signed-off-by: Dong Yang <[email protected]> * Add visualization tutorial transform image (Project-MONAI#448) * [DLMED] add visualization tutorial Signed-off-by: Nic Ma <[email protected]> * [DLMED] add image Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] update notebook Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference image Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix PEP error Signed-off-by: Nic Ma <[email protected]> * Update spleen_segmentation_3d.ipynb (Project-MONAI#455) The `pip install` statement is missing pytorch-ignite. Changing: `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm]"` to `!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm, ignite]"` * Figures added, pretrained weights link added, minor fixes (Project-MONAI#456) * Figures added, pretrained weights link added, minor fixes Signed-off-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: vnath <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Add itkwidgets example in notebook (Project-MONAI#454) * [DLMED] add itkwidgets Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reference screenshot Signed-off-by: Nic Ma <[email protected]> * [DLMED] update to PLS orientation Signed-off-by: Nic Ma <[email protected]> * MIL example (Project-MONAI#431) * MIL example Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * mil tutorial update Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * small updates Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated images Signed-off-by: myron <[email protected]> * gdown for json Signed-off-by: myron <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README Signed-off-by: Behrooz <[email protected]> * Fix formatting and typos Signed-off-by: Behrooz <[email protected]> * small fixes Signed-off-by: myron <[email protected]> * stats Signed-off-by: myron <[email protected]> * pip install Signed-off-by: myron <[email protected]> * README fixes Signed-off-by: myron <[email protected]> Co-authored-by: am <am> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]> * 450 update AsDiscrete (Project-MONAI#451) * update asdiscrete Signed-off-by: Yiheng Wang <[email protected]> * update postprocessing figures Signed-off-by: Yiheng Wang <[email protected]> * fix version error of mutual info Signed-off-by: Yiheng Wang <[email protected]> * update to use include in torchin Signed-off-by: Yiheng Wang <[email protected]> * 459 update nvidia flare 2.0 example (Project-MONAI#460) * update nvidia flare 2.0 example Signed-off-by: Yiheng Wang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * enhance code format Signed-off-by: Yiheng Wang <[email protected]> * update folder and readme Signed-off-by: Yiheng Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Weights Link Updated (Project-MONAI#465) Signed-off-by: vnath <[email protected]> Co-authored-by: vnath <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixes readme typos Signed-off-by: Wenqi Li <[email protected]> * update readmes Signed-off-by: Wenqi Li <[email protected]> * update readme Signed-off-by: Wenqi Li <[email protected]> * qa commit Signed-off-by: Wenqi Li <[email protected]> * link Signed-off-by: Wenqi Li <[email protected]> * Add plot arch_code utils * Fix bugs in search and update readme * Fix combination weights bug * Small typo update * Fix minor bug in train_dints * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Update Readme * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Change arch code keys * update scripts Signed-off-by: Dong Yang <[email protected]> * update scripts Signed-off-by: Dong Yang <[email protected]> Co-authored-by: dongy <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: heyufan1995 <[email protected]>
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Fixes #436 .
Description
This PR added tutorial to show the visualization methods of matshow3d, 3d GIF, blend image, matplotlib, etc.
Status
Ready
Checks
./runner [-p <regex_pattern>]