Skip to content

swin bundle for monai 1.0.1 and pytorch 1.13, num_sample change#182

Merged
yiheng-wang-nv merged 2 commits intoProject-MONAI:devfrom
tangy5:swin_unetr_monai101_pytorch_13
Nov 7, 2022
Merged

swin bundle for monai 1.0.1 and pytorch 1.13, num_sample change#182
yiheng-wang-nv merged 2 commits intoProject-MONAI:devfrom
tangy5:swin_unetr_monai101_pytorch_13

Conversation

@tangy5
Copy link
Copy Markdown
Collaborator

@tangy5 tangy5 commented Nov 4, 2022

Signed-off-by: tangy5 [email protected]

This is for updating swin_unetr_btcv_segmentation bundle for MONAI 1.0.1 and Pytorch 1.13.0.
Associate with #180

BTW, modified some default parameter to be "friendly" with MONAI Label usage, to reduce latency.

@yiheng-wang-nv
Copy link
Copy Markdown
Collaborator

/build

@yiheng-wang-nv
Copy link
Copy Markdown
Collaborator

/build

@yiheng-wang-nv yiheng-wang-nv enabled auto-merge (squash) November 7, 2022 06:28
@yiheng-wang-nv yiheng-wang-nv merged commit 06053c2 into Project-MONAI:dev Nov 7, 2022
yiheng-wang-nv added a commit that referenced this pull request Nov 8, 2022
Fixes #180 and #186 

### Description
This PR follows #179 and #182 to update some of the remanent bundles
into monai 1.0.1 version:
`endoscopic_inbody_classification` and `endoscopic_tool_segmentation`
are verified by @binliunls ,
`spleen_deepedit_annotation`, `pancreas_ct_dints_segmentation` are
verified by myself.

`lung_nodule_ct_detection` is updated without detailed check due to the
size of the dataset.

For `pathology_tumor_detection`, as mentioned in:
Project-MONAI/MONAI#5485 in order to match
monai 1.0.1, this bundle is adjusted to not support torchscript.


### Status
**Ready**

### Please ensure all the checkboxes:
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Codeformat tests passed locally by running `./runtests.sh
--codeformat`.
- [ ] In-line docstrings updated.
- [ ] Update `version` and `changelog` in `metadata.json` if changing an
existing bundle.
- [ ] Please ensure the naming rules in config files meet our
requirements (please refer to: `CONTRIBUTING.md`).
- [ ] Ensure versions of packages such as `monai`, `pytorch` and `numpy`
are correct in `metadata.json`.
- [ ] Descriptions should be consistent with the content, such as
`eval_metrics` of the provided weights and TorchScript modules.
- [ ] Files larger than 25MB are excluded and replaced by providing
download links in `large_file.yml`.
- [ ] Avoid using path that contains personal information within config
files (such as use `/home/your_name/` for `"bundle_root"`).

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
yiheng-wang-nv added a commit to yiheng-wang-nv/model-zoo that referenced this pull request Jul 29, 2024
…ect-MONAI#182)

Signed-off-by: tangy5 <[email protected]>

This is for updating swin_unetr_btcv_segmentation bundle for MONAI 1.0.1
and Pytorch 1.13.0.
Associate with Project-MONAI#180

BTW, modified some default parameter to be "friendly" with MONAI Label
usage, to reduce latency.

Signed-off-by: tangy5 <[email protected]>
Co-authored-by: Yiheng Wang <[email protected]>
yiheng-wang-nv added a commit to yiheng-wang-nv/model-zoo that referenced this pull request Jul 29, 2024
Fixes Project-MONAI#180 and Project-MONAI#186 

### Description
This PR follows Project-MONAI#179 and Project-MONAI#182 to update some of the remanent bundles
into monai 1.0.1 version:
`endoscopic_inbody_classification` and `endoscopic_tool_segmentation`
are verified by @binliunls ,
`spleen_deepedit_annotation`, `pancreas_ct_dints_segmentation` are
verified by myself.

`lung_nodule_ct_detection` is updated without detailed check due to the
size of the dataset.

For `pathology_tumor_detection`, as mentioned in:
Project-MONAI/MONAI#5485 in order to match
monai 1.0.1, this bundle is adjusted to not support torchscript.


### Status
**Ready**

### Please ensure all the checkboxes:
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Codeformat tests passed locally by running `./runtests.sh
--codeformat`.
- [ ] In-line docstrings updated.
- [ ] Update `version` and `changelog` in `metadata.json` if changing an
existing bundle.
- [ ] Please ensure the naming rules in config files meet our
requirements (please refer to: `CONTRIBUTING.md`).
- [ ] Ensure versions of packages such as `monai`, `pytorch` and `numpy`
are correct in `metadata.json`.
- [ ] Descriptions should be consistent with the content, such as
`eval_metrics` of the provided weights and TorchScript modules.
- [ ] Files larger than 25MB are excluded and replaced by providing
download links in `large_file.yml`.
- [ ] Avoid using path that contains personal information within config
files (such as use `/home/your_name/` for `"bundle_root"`).

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants