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Update with the changes in sobel gradients#5503

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bhashemian merged 8 commits intoProject-MONAI:devfrom
bhashemian:update-hoverloss
Nov 16, 2022
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Update with the changes in sobel gradients#5503
bhashemian merged 8 commits intoProject-MONAI:devfrom
bhashemian:update-hoverloss

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Fixes #5500

Description

Update HoVerNetLoss with the improvements and changes in SobelGradients.

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).

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One question - is there any practical reason not to use the channel for the batch (apart from the fact that it is called 'channel' and not 'batch')? If not then perhaps we should generalize Sobel so that it can take either (or both). Just a thought.

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bhashemian commented Nov 9, 2022

One question - is there any practical reason not to use the channel for the batch (apart from the fact that it is called 'channel' and not 'batch')? If not then perhaps we should generalize Sobel so that it can take either (or both). Just a thought.

That's a good point! I avoided it because of clarity but now that you are mentioning it, I think why not! I will make the change and also update the SobelGradients docstring to make it clear that it can be channel or batch!

@bhashemian bhashemian requested a review from JHancox November 9, 2022 17:29
@bhashemian bhashemian requested a review from wyli November 10, 2022 13:00
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wyli commented Nov 10, 2022

@KumoLiu please help check with the training pipeline

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KumoLiu commented Nov 10, 2022

@KumoLiu please help check with the training pipeline

Yes, I'm checking right now!

@bhashemian bhashemian enabled auto-merge (squash) November 16, 2022 15:02
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Hi @Nic-Ma, could you please help to merge this PR? Thanks

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Nic-Ma commented Nov 16, 2022

Hi @Nic-Ma, could you please help to merge this PR? Thanks

Hi @drbeh ,

#5480 is running Blossom CI, I will merge this PR after it.

Thanks.

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Nic-Ma commented Nov 16, 2022

/build

@bhashemian bhashemian merged commit 5a6672c into Project-MONAI:dev Nov 16, 2022
@bhashemian bhashemian deleted the update-hoverloss branch November 16, 2022 17:04
bhashemian added a commit to bhashemian/MONAI that referenced this pull request Nov 23, 2022
Fixes Project-MONAI#5500 

### Description

Update `HoVerNetLoss` with the improvements and changes in
`SobelGradients`.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).

Signed-off-by: Behrooz <[email protected]>
@KumoLiu KumoLiu mentioned this pull request Dec 15, 2022
7 tasks
wyli pushed a commit that referenced this pull request Dec 15, 2022
Signed-off-by: KumoLiu <[email protected]>

Fixes #5750.

### Description
Change dim in Sobel gradient which have been discussed in
#5503.

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: KumoLiu <[email protected]>
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Dim error in HoVerNetLoss

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