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[Ready for review] Auto3D functional fixes in the BundleGen module#5087

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Nic-Ma merged 15 commits intoProject-MONAI:devfrom
mingxin-zheng:BundleGen-5085
Sep 6, 2022
Merged

[Ready for review] Auto3D functional fixes in the BundleGen module#5087
Nic-Ma merged 15 commits intoProject-MONAI:devfrom
mingxin-zheng:BundleGen-5085

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@mingxin-zheng mingxin-zheng commented Sep 5, 2022

Description

Part of the requested improvements #5085

Planned fixes

  • fold number is not being updated in generate()
  • put absolute paths in the bundle configs
  • break the auto-generated auto_config into multiple files.

Status

WIP

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

Signed-off-by: Mingxin Zheng <[email protected]>
@mingxin-zheng mingxin-zheng changed the title [WIP] Auto3D functional fixes in the BundleGen module [Ready for review] Auto3D functional fixes in the BundleGen module Sep 5, 2022
Signed-off-by: Mingxin Zheng <[email protected]>
Signed-off-by: Mingxin Zheng <[email protected]>
Signed-off-by: Mingxin Zheng <[email protected]>
Signed-off-by: Mingxin Zheng <[email protected]>
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Thanks for the quick update according to test feedback.
Overall looks good to me, put minor comments inline.

Thanks.

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Nic-Ma commented Sep 6, 2022

/black

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Nic-Ma commented Sep 6, 2022

/build

@Nic-Ma Nic-Ma enabled auto-merge (squash) September 6, 2022 07:47
Signed-off-by: monai-bot <[email protected]>
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Nic-Ma commented Sep 6, 2022

/build

@Nic-Ma Nic-Ma merged commit 4105299 into Project-MONAI:dev Sep 6, 2022
wyli pushed a commit to yashika-git/MONAI that referenced this pull request Sep 6, 2022
…roject-MONAI#5087)

### Description
Part of the requested improvements Project-MONAI#5085 

Planned fixes
- [x] fold number is not being updated in generate()
- [x] put absolute paths in the bundle configs
- [x] break the auto-generated auto_config into multiple files.

### Status
WIP

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not applicable items -->
- [x] Non-breaking change (fix or new feature that would not break existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests  --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/` folder.

Signed-off-by: Mingxin Zheng <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Nic Ma <[email protected]>
@mingxin-zheng mingxin-zheng deleted the BundleGen-5085 branch September 9, 2022 01:17
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4 participants