Make the flexible unet more extensible to different backbones#5038
Merged
wyli merged 51 commits intoProject-MONAI:devfrom Oct 20, 2022
Merged
Make the flexible unet more extensible to different backbones#5038wyli merged 51 commits intoProject-MONAI:devfrom
wyli merged 51 commits intoProject-MONAI:devfrom
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Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
…tly adding more backbones Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Nic-Ma
approved these changes
Oct 20, 2022
Nic-Ma
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Oct 20, 2022
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wyli
reviewed
Oct 20, 2022
Signed-off-by: monai-bot <[email protected]>
Signed-off-by: binliu <[email protected]>
…ster. Signed-off-by: binliu <[email protected]>
…ble unet backbone. Signed-off-by: binliu <[email protected]>
Contributor
|
/build |
Signed-off-by: binliu <[email protected]>
Signed-off-by: binliu <[email protected]>
Contributor
|
/build |
Contributor
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/build |
Nic-Ma
approved these changes
Oct 20, 2022
wyli
pushed a commit
that referenced
this pull request
Oct 24, 2022
Signed-off-by: binliu <[email protected]> Fixes #5011 . ### Description Currently, the FlexibleUNet structure only supports the efficient-net series as the backbone and it is hard to extend to other network structures. A more extensible and convenient way to add more benchmark or user-defined backbones will make it more flexible. I plan to make it by doing steps below 1. A base backbone/encoder class that defines interfaces like the number of output feature maps, a list of output feature map channels, string names of backbones and so on. 2. A register that can dynamically register backbones to a dict that will be used during the flexible unet initialization. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: binliu <[email protected]>
wyli
pushed a commit
that referenced
this pull request
Oct 24, 2022
Signed-off-by: binliu <[email protected]> Fixes #5011 . ### Description Currently, the FlexibleUNet structure only supports the efficient-net series as the backbone and it is hard to extend to other network structures. A more extensible and convenient way to add more benchmark or user-defined backbones will make it more flexible. I plan to make it by doing steps below 1. A base backbone/encoder class that defines interfaces like the number of output feature maps, a list of output feature map channels, string names of backbones and so on. 2. A register that can dynamically register backbones to a dict that will be used during the flexible unet initialization. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: binliu <[email protected]>
KumoLiu
pushed a commit
that referenced
this pull request
Nov 2, 2022
Signed-off-by: binliu <[email protected]> Fixes #5011 . ### Description Currently, the FlexibleUNet structure only supports the efficient-net series as the backbone and it is hard to extend to other network structures. A more extensible and convenient way to add more benchmark or user-defined backbones will make it more flexible. I plan to make it by doing steps below 1. A base backbone/encoder class that defines interfaces like the number of output feature maps, a list of output feature map channels, string names of backbones and so on. 2. A register that can dynamically register backbones to a dict that will be used during the flexible unet initialization. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: binliu <[email protected]> Signed-off-by: KumoLiu <[email protected]>
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Signed-off-by: binliu [email protected]
Fixes #5011 .
Description
Currently, the FlexibleUNet structure only supports the efficient-net series as the backbone and it is hard to extend to other network structures. A more extensible and convenient way to add more benchmark or user defined backbones will make it more flexible. I plan to make it by doing steps below
A base backbone/encoder class that defines interfaces like the number of output feature maps, a list of output feature map channels, string names of backbones and so on.
A register who can dynamically regist backbones to a dict that will be used during the flexible unet initialization.
Status
Work in progress
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests --disttests.make htmlcommand in thedocs/folder.