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3251 Add dependency check in WSIReader#3312

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Nic-Ma merged 13 commits intoProject-MONAI:devfrom
Nic-Ma:3251-add-dep-check
Nov 12, 2021
Merged

3251 Add dependency check in WSIReader#3312
Nic-Ma merged 13 commits intoProject-MONAI:devfrom
Nic-Ma:3251-add-dep-check

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@Nic-Ma Nic-Ma commented Nov 11, 2021

Fixes #3251 .

Description

This PR is follow up of #3251 to add the dependency check in WSIReader.

Status

Ready

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

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Nic-Ma commented Nov 11, 2021

/black

Signed-off-by: Nic Ma <[email protected]>
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Nic-Ma commented Nov 11, 2021

/black

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Nic-Ma commented Nov 11, 2021

/build

@Nic-Ma Nic-Ma changed the title [WIP] 3251 Add dependency check in WSIReader 3251 Add dependency check in WSIReader Nov 11, 2021
@Nic-Ma Nic-Ma marked this pull request as ready for review November 11, 2021 08:09
@Nic-Ma Nic-Ma mentioned this pull request Nov 11, 2021
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@Nic-Ma Nic-Ma requested a review from wyli November 11, 2021 17:54
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Nic-Ma commented Nov 11, 2021

/black

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Nic-Ma commented Nov 11, 2021

/build

@Nic-Ma Nic-Ma enabled auto-merge (squash) November 11, 2021 17:55
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Thanks, it looks good to me.

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Nic-Ma commented Nov 11, 2021

/build

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Nic-Ma commented Nov 11, 2021

/build

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Nic-Ma commented Nov 11, 2021

/build

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Nic-Ma commented Nov 12, 2021

/build

@Nic-Ma Nic-Ma merged commit 9837876 into Project-MONAI:dev Nov 12, 2021
bhashemian added a commit that referenced this pull request Nov 16, 2021
* 3251 Add dependency check in WSIReader (#3312)

* [DLMED] add dep check

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix typo

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: myron <[email protected]>

* [DLMED] MILmodel  PR

Signed-off-by: myron <[email protected]>

* small updates

Signed-off-by: myron <[email protected]>

* fix jit issues

Signed-off-by: myron <[email protected]>

* jit fix attempt

Signed-off-by: myron <[email protected]>

* removing Enum

Signed-off-by: myron <[email protected]>

Co-authored-by: Nic Ma <[email protected]>
Co-authored-by: Behrooz <[email protected]>
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tifffile support in WSIReader

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