Tifffile support in WSIReader#3278
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Nic-Ma merged 14 commits intoProject-MONAI:devfrom Nov 11, 2021
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Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
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@Nic-Ma could you please take a look at this and run |
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/build |
Nic-Ma
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Nov 8, 2021
Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Behrooz <[email protected]>
Nic-Ma
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Nov 11, 2021
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Looks good to me.
Thanks for the update.
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/build |
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/build |
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/build |
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/build |
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Fixes #3251
Description
This PR adds support for
tifffilein WSIReader to read TIFF files (which is common in histopathology whole slide imaging). Whilecucimandopenslideboth can load patches from large whole slide images without loading the entire image into memory,tifffileloads the entire image into before extracting any patch. Thus memory consideration is needed when usingtifffilefor patch extraction.Status
Ready
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests.