Skip to content

Updated RandKSpaceSpikeNoised. Collected Fourier mappings.#2665

Merged
wyli merged 10 commits intoProject-MONAI:devfrom
yanielc:spikes_and_fourier
Aug 2, 2021
Merged

Updated RandKSpaceSpikeNoised. Collected Fourier mappings.#2665
wyli merged 10 commits intoProject-MONAI:devfrom
yanielc:spikes_and_fourier

Conversation

@yanielc
Copy link
Copy Markdown
Contributor

@yanielc yanielc commented Jul 28, 2021

Fixes #2642

Signed-off-by: Yaniel Cabrera [email protected]

Description

  1. Allow RandKSpaceSpikeNoised to work with arbitrary keys.
  2. Introduced Fourier transform to keep the forward/backward fourier mappings.
  3. Using torch.fft module now with @SkipIfNoModule("torch.fft") in respective unit tests.

Status

Work in progress

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

yanielc and others added 6 commits July 28, 2021 21:58
…oised.

1. Allow RandKSpaceSpikeNoised to work with arbitrary keys.
2. Introduced Fourier transform to keep the forward/backward fourier mappings.

Signed-off-by: Yaniel Cabrera <[email protected]>
Signed-off-by: Yaniel Cabrera <[email protected]>
Ignore tests with versions of Pytorch which lack the module fft.

Signed-off-by: Yaniel Cabrera <[email protected]>
Signed-off-by: Yaniel Cabrera <[email protected]>
Signed-off-by: Yaniel Cabrera <[email protected]>
Copy link
Copy Markdown
Contributor

@wyli wyli left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

thanks! looks good apart from the minor type hint issue, feel free to # type: ignore

@madil90
Copy link
Copy Markdown
Contributor

madil90 commented Aug 2, 2021

/build

@wyli wyli enabled auto-merge (squash) August 2, 2021 13:04
@wyli wyli merged commit 4f7371a into Project-MONAI:dev Aug 2, 2021
wyli pushed a commit to wyli/MONAI that referenced this pull request Aug 3, 2021
…ONAI#2665)

* Moved fourier functions to their own class. Modified RandKSpaceSpikeNoised.

1. Allow RandKSpaceSpikeNoised to work with arbitrary keys.
2. Introduced Fourier transform to keep the forward/backward fourier mappings.

Signed-off-by: Yaniel Cabrera <[email protected]>

* removed old code

Signed-off-by: Yaniel Cabrera <[email protected]>

* Ignore torch.fft tests if not present

Ignore tests with versions of Pytorch which lack the module fft.

Signed-off-by: Yaniel Cabrera <[email protected]>

* update

Signed-off-by: Yaniel Cabrera <[email protected]>

* typing update

Signed-off-by: Yaniel Cabrera <[email protected]>

* added unit test for Fourier

Signed-off-by: Yaniel Cabrera <[email protected]>

* added unit test for Fourier

Signed-off-by: Yaniel Cabrera <[email protected]>

* fixing black

Signed-off-by: Yaniel Cabrera <[email protected]>
@yanielc yanielc deleted the spikes_and_fourier branch February 6, 2022 17:48
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

RandKSpaceSpikeNoised could be more generic

3 participants