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Transpose tissue masks for pathology inference#2074

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bhashemian merged 1 commit intoProject-MONAI:masterfrom
bhashemian:tissue_mask
Apr 23, 2021
Merged

Transpose tissue masks for pathology inference#2074
bhashemian merged 1 commit intoProject-MONAI:masterfrom
bhashemian:tissue_mask

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Description

This PR modify the pathology inference dataset to assume the tissue masks have the shape of HxW as the whole slide images at different levels.

Status

Ready

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

@bhashemian bhashemian enabled auto-merge (squash) April 23, 2021 01:29
@bhashemian bhashemian requested a review from wyli April 23, 2021 01:29
@bhashemian bhashemian merged commit fea9307 into Project-MONAI:master Apr 23, 2021
@bhashemian bhashemian deleted the tissue_mask branch November 23, 2021 23:52
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2 participants