pytype doesn't work on macOS #2391
Description
Describe the bug
./runtests.h --pytype gives an error on macOS, looks like it's a pytype issue google/pytype#661
Details
pytype
2021.06.17
Computing dependencies
Analyzing 180 sources with 8 local dependencies
ninja: Entering directory `.pytype'
[1/120] check monai.data.dataloader
FAILED: /Users/testing/Documents/MONAI/.pytype/pyi/monai/data/dataloader.pyi
/usr/local/anaconda3/envs/py37/bin/python -m pytype.single --disable pyi-error --imports_info /Users/testing/Documents/MONAI/.pytype/imports/monai.data.dataloader.imports --module-name monai.data.dataloader -V 3.7 -o /Users/testing/Documents/MONAI/.pytype/pyi/monai/data/dataloader.pyi --analyze-annotated --check-parameter-types --nofail --precise-return --protocols --quick /Users/testing/Documents/MONAI/monai/data/dataloader.py
ERROR:pytype.imports_map_loader Invalid imports_map entries (checking from root dir: /Users/testing/Documents/MONAI/.pytype)
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/data/dataloader.pyi' (mapped from 'monai/data/dataloader')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/data/image_reader.pyi' (mapped from 'monai/data/image_reader')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/data/nifti_saver.pyi' (mapped from 'monai/data/nifti_saver')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/data/nifti_writer.pyi' (mapped from 'monai/data/nifti_writer')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/data/png_saver.pyi' (mapped from 'monai/data/png_saver')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/data/png_writer.pyi' (mapped from 'monai/data/png_writer')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/data/utils.pyi' (mapped from 'monai/data/utils')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/__init__.pyi' (mapped from 'monai/transforms/__init__')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/compose.pyi' (mapped from 'monai/transforms/compose')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/croppad/array.pyi' (mapped from 'monai/transforms/croppad/array')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/croppad/batch.pyi' (mapped from 'monai/transforms/croppad/batch')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/croppad/dictionary.pyi' (mapped from 'monai/transforms/croppad/dictionary')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/intensity/array.pyi' (mapped from 'monai/transforms/intensity/array')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/intensity/dictionary.pyi' (mapped from 'monai/transforms/intensity/dictionary')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/inverse.pyi' (mapped from 'monai/transforms/inverse')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/inverse_batch_transform.pyi' (mapped from 'monai/transforms/inverse_batch_transform')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/io/array.pyi' (mapped from 'monai/transforms/io/array')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/io/dictionary.pyi' (mapped from 'monai/transforms/io/dictionary')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/post/array.pyi' (mapped from 'monai/transforms/post/array')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/post/dictionary.pyi' (mapped from 'monai/transforms/post/dictionary')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/spatial/array.pyi' (mapped from 'monai/transforms/spatial/array')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/spatial/dictionary.pyi' (mapped from 'monai/transforms/spatial/dictionary')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/transform.pyi' (mapped from 'monai/transforms/transform')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/utility/array.pyi' (mapped from 'monai/transforms/utility/array')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/utility/dictionary.pyi' (mapped from 'monai/transforms/utility/dictionary')
ERROR:pytype.imports_map_loader file does not exist: '/Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/utils.pyi' (mapped from 'monai/transforms/utils')
Traceback (most recent call last):
File "/usr/local/anaconda3/envs/py37/lib/python3.7/runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "/usr/local/anaconda3/envs/py37/lib/python3.7/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/usr/local/anaconda3/envs/py37/lib/python3.7/site-packages/pytype/single.py", line 97, in <module>
sys.exit(main() or 0)
File "/usr/local/anaconda3/envs/py37/lib/python3.7/site-packages/pytype/single.py", line 62, in main
options = config.Options(sys.argv[1:], command_line=True)
File "/usr/local/anaconda3/envs/py37/lib/python3.7/site-packages/pytype/config.py", line 68, in __init__
Postprocessor(names, options, self).process()
File "/usr/local/anaconda3/envs/py37/lib/python3.7/site-packages/pytype/config.py", line 419, in process
node.processor(value)
File "/usr/local/anaconda3/envs/py37/lib/python3.7/site-packages/pytype/config.py", line 555, in _store_imports_map
imports_map, self.output_options.open_function)
File "/usr/local/anaconda3/envs/py37/lib/python3.7/site-packages/pytype/imports_map_loader.py", line 78, in build_imports_map
raise ValueError(msg)
ValueError: Invalid imports_map: /Users/testing/Documents/MONAI/.pytype/imports/monai.data.dataloader.imports
Bad entries:
monai/data/dataloader -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/data/dataloader.pyi
monai/data/image_reader -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/data/image_reader.pyi
monai/data/nifti_saver -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/data/nifti_saver.pyi
monai/data/nifti_writer -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/data/nifti_writer.pyi
monai/data/png_saver -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/data/png_saver.pyi
monai/data/png_writer -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/data/png_writer.pyi
monai/data/utils -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/data/utils.pyi
monai/transforms/__init__ -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/__init__.pyi
monai/transforms/compose -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/compose.pyi
monai/transforms/croppad/array -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/croppad/array.pyi
monai/transforms/croppad/batch -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/croppad/batch.pyi
monai/transforms/croppad/dictionary -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/croppad/dictionary.pyi
monai/transforms/intensity/array -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/intensity/array.pyi
monai/transforms/intensity/dictionary -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/intensity/dictionary.pyi
monai/transforms/inverse -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/inverse.pyi
monai/transforms/inverse_batch_transform -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/inverse_batch_transform.pyi
monai/transforms/io/array -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/io/array.pyi
monai/transforms/io/dictionary -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/io/dictionary.pyi
monai/transforms/post/array -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/post/array.pyi
monai/transforms/post/dictionary -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/post/dictionary.pyi
monai/transforms/spatial/array -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/spatial/array.pyi
monai/transforms/spatial/dictionary -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/spatial/dictionary.pyi
monai/transforms/transform -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/transform.pyi
monai/transforms/utility/array -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/utility/array.pyi
monai/transforms/utility/dictionary -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/utility/dictionary.pyi
monai/transforms/utils -> /Users/testing/Documents/MONAI/.pytype/pyi/monai/transforms/utils.pyi/
MONAI version: 0.5.3+120.g06937291
Numpy version: 1.20.3
Pytorch version: 1.9.0
MONAI flags: HAS_EXT = False, USE_COMPILED = False
MONAI rev id: 069372910b532b0db2da35421d7da8605362aeb0
Optional dependencies:
Pytorch Ignite version: 0.4.4
Nibabel version: 3.2.1
scikit-image version: 0.18.1
Pillow version: 8.2.0
Tensorboard version: 2.5.0
gdown version: 3.13.0
TorchVision version: 0.10.0
ITK version: 5.1.2
tqdm version: 4.61.1
lmdb version: 1.2.1
psutil version: 5.8.0
For details about installing the optional dependencies, please visit:
https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies