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@PavlidisLab

Pavlidis lab

The Pavlidis Lab at the University of British Columbia

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  1. neuroexpresso neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    R 18 1

  2. Gemma Gemma Public

    Genomics data re-analysis

    Java 24 6

  3. markerGeneProfile markerGeneProfile Public

    Marker gene profile estimation method used in NeuroExpresso manuscript

    R 14 2

Repositories

Showing 10 of 69 repositories
  • Gemma Public

    Genomics data re-analysis

    PavlidisLab/Gemma’s past year of commit activity
    Java 24 Apache-2.0 6 352 35 Updated Jan 14, 2026
  • gemma.R Public

    An R wrapper for the Gemma RESTful API

    PavlidisLab/gemma.R’s past year of commit activity
    R 10 Apache-2.0 1 10 0 Updated Jan 14, 2026
  • sc-annotation-pipeline Public
    PavlidisLab/sc-annotation-pipeline’s past year of commit activity
    Python 1 0 4 2 Updated Jan 12, 2026
  • gemmapy Public
    PavlidisLab/gemmapy’s past year of commit activity
    Python 6 Apache-2.0 1 11 2 Updated Jan 9, 2026
  • bioluigi Public

    Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines

    PavlidisLab/bioluigi’s past year of commit activity
    Python 9 Apache-2.0 0 6 3 Updated Jan 7, 2026
  • baseCode Public

    Data structures, math and statistics tools, and utilities that are often needed across projects.

    PavlidisLab/baseCode’s past year of commit activity
    Java 4 Apache-2.0 0 4 2 Updated Jan 6, 2026
  • gsec Public

    Reusable implementation of the Spring Security framework for lab projects

    PavlidisLab/gsec’s past year of commit activity
    Java 0 Apache-2.0 0 3 6 Updated Jan 6, 2026
  • rnaseq-pipeline Public

    RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

    PavlidisLab/rnaseq-pipeline’s past year of commit activity
    Python 24 Unlicense 5 22 1 Updated Jan 6, 2026
  • pavlab-starter-parent Public

    Curated dependencies for the Pavlidis Lab's Java applications

    PavlidisLab/pavlab-starter-parent’s past year of commit activity
    0 Apache-2.0 0 4 1 Updated Jan 5, 2026
  • ndb Public

    Web application and database providing a harmonized and comprehensive collection of genetic variants published in peer-reviewed literature.

    PavlidisLab/ndb’s past year of commit activity
    Java 4 Apache-2.0 0 19 (1 issue needs help) 1 Updated Dec 5, 2025
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