This tool is for users to visualize their existing TAD bed files and chromosome contact data

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Field	Description	Exmaple
Title	Provide a title for your job submission	Example Job Submission Chr4
Description	Provide a brief description for this Submission. This will be helpful in case you make multiple submissions	Example Matrix dataset from 40-42.5Mb region of GM12878 dataset chromosome 4
Chromosome	Our tool can only extract TAD per chromosome. Hence specify the chromosome number for this job. Number only	4
Email	Provide the email address where we would send you a notification when your job is completed. Please confirm that the email address you provide is correct(Optional)	"your email address" or leave blank
Resolution	Resolution for the input contact matrix in basepairs. For example 40kb = 40000, 10kb = 10000	10000

Click Next Button to Continue

An example screenshot is provided below:

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Here the user will upload two bed files. Click on the Submit button to process the upload.
Example Bed Files Upload:
Download Sample BED EXAMPLE1 | Download Sample BED EXAMPLE2 !!

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The three fields in each feature line are tab-separated:
1. chrom - name of the chromosome or scaffold. Any valid seq_region_name can be used, and chromosome names can be given with or without the 'chr' prefix.
2. chromStart - Start position of the feature in standard chromosomal coordinates (i.e. first base is 0).
3. chromEnd - End position of the feature in standard chromosomal coordinates

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The first two fields in each feature line are comma-separated:
1. chromStart - Start position of the feature in standard chromosomal coordinates (i.e. first base is 0).
2. chromEnd - End position of the feature in standard chromosomal coordinates

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Finally, you get the submission report: !!

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See the Result for this Submission