❯ checking examples with --run-donttest ... [15s/14s] ERROR
Running examples in ‘FeatureExtraction-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: createTable1
> ### Title: Create a table 1
> ### Aliases: createTable1
>
> ### ** Examples
>
> ## No test:
> eunomiaConnectionDetails <- Eunomia::getEunomiaConnectionDetails()
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: /var/folders/0j/bwqcs4y508s2n4ck4dhf3rpc0000gn/T//RtmpvmpvWO/working_dir/RtmpzVhcal/GiBleed_5.3.zip to: /var/folders/0j/bwqcs4y508s2n4ck4dhf3rpc0000gn/T//RtmpvmpvWO/working_dir/RtmpzVhcal/GiBleed_5.3.sqlite
> covSettings <- createDefaultCovariateSettings()
> Eunomia::createCohorts(
+ connectionDetails = eunomiaConnectionDetails,
+ cdmDatabaseSchema = "main",
+ cohortDatabaseSchema = "main",
+ cohortTable = "cohort"
+ )
Cohorts created in table main.cohort
cohortId name
1 1 Celecoxib
2 2 Diclofenac
3 3 GiBleed
4 4 NSAIDs
description
1 A simplified cohort definition for new users of celecoxib, designed specifically for Eunomia.
2 A simplified cohort definition for new users ofdiclofenac, designed specifically for Eunomia.
3 A simplified cohort definition for gastrointestinal bleeding, designed specifically for Eunomia.
4 A simplified cohort definition for new users of NSAIDs, designed specifically for Eunomia.
count
1 1844
2 [850](https://github.com/OHDSI/FeatureExtraction/actions/runs/13863669648/job/38797844222#step:13:851)
3 479
4 2694
> covData1 <- getDbCovariateData(
+ connectionDetails = eunomiaConnectionDetails,
+ tempEmulationSchema = NULL,
+ cdmDatabaseSchema = "main",
+ cdmVersion = "5",
+ cohortTable = "cohort",
+ cohortDatabaseSchema = "main",
+ cohortTableIsTemp = FALSE,
+ cohortId = 1,
+ rowIdField = "subject_id",
Executing SQL took 0.[856](https://github.com/OHDSI/FeatureExtraction/actions/runs/13863669648/job/38797844222#step:13:857) secs
Fetching data from server
Fetching data took 0.0643 secs
> table1 <- createTable1(
+ covariateData1 = covData1,
+ covariateData2 = covData2,
+ cohortId1 = 1,
+ cohortId2 = 2,
+ specifications = getDefaultTable1Specifications(),
+ output = "one column",
+ showCounts = FALSE,
+ showPercent = TRUE,
+ percentDigits = 1,
+ valueDigits = 1,
+ stdDiffDigits = 2
+ )
Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()
Execution halted
Since a while the R check is failing on MAC OS: