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python311Packages.shapely: 2.0.1 → 2.0.2#263989

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doronbehar merged 1 commit intoNixOS:masterfrom
jtojnar:shapely
Nov 17, 2023
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python311Packages.shapely: 2.0.1 → 2.0.2#263989
doronbehar merged 1 commit intoNixOS:masterfrom
jtojnar:shapely

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@jtojnar jtojnar commented Oct 28, 2023

Description of changes

https://github.com/shapely/shapely/releases/tag/2.0.2

The tests were moved to shapely/ directory so we cannot just remove it.

Blocks geos bump: #240229

Things done

  • Built on platform(s)
    • x86_64-linux
    • aarch64-linux
    • x86_64-darwin
    • aarch64-darwin
  • For non-Linux: Is sandboxing enabled in nix.conf? (See Nix manual)
    • sandbox = relaxed
    • sandbox = true
  • Tested, as applicable:
  • Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
  • Tested basic functionality of all binary files (usually in ./result/bin/)
  • 23.11 Release Notes (or backporting 23.05 Release notes)
    • (Package updates) Added a release notes entry if the change is major or breaking
    • (Module updates) Added a release notes entry if the change is significant
    • (Module addition) Added a release notes entry if adding a new NixOS module
  • Fits CONTRIBUTING.md.

@github-actions github-actions bot added the 6.topic: python Python is a high-level, general-purpose programming language. label Oct 28, 2023
@jtojnar jtojnar mentioned this pull request Oct 28, 2023
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This is ugly but without it, test collection fails because it will try to load shapely from the project directory:

============================= test session starts ==============================
platform linux -- Python 3.11.5, pytest-7.4.2, pluggy-1.2.0
rootdir: /build/shapely-2.0.2
configfile: setup.cfg
collected 0 items / 1 error                                                    

==================================== ERRORS ====================================
________________________ ERROR collecting test session _________________________
/nix/store/lhjsx27ijd31l8qgxkv5rv1z0c3hs7pn-python3.11-pytest-7.4.2/lib/python3.11/site-packages/_pytest/config/__init__.py:641: in _importconftest
    mod = import_path(conftestpath, mode=importmode, root=rootpath)
/nix/store/lhjsx27ijd31l8qgxkv5rv1z0c3hs7pn-python3.11-pytest-7.4.2/lib/python3.11/site-packages/_pytest/pathlib.py:567: in import_path
    importlib.import_module(module_name)
/nix/store/ffll6glz3gwx342z0ch8wx30p5cnqz1z-python3-3.11.5/lib/python3.11/importlib/__init__.py:126: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1204: in _gcd_import
    ???
<frozen importlib._bootstrap>:1176: in _find_and_load
    ???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
    ???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
    ???
<frozen importlib._bootstrap>:1204: in _gcd_import
    ???
<frozen importlib._bootstrap>:1176: in _find_and_load
    ???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
    ???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
    ???
<frozen importlib._bootstrap>:1204: in _gcd_import
    ???
<frozen importlib._bootstrap>:1176: in _find_and_load
    ???
<frozen importlib._bootstrap>:1126: in _find_and_load_unlocked
    ???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
    ???
<frozen importlib._bootstrap>:1204: in _gcd_import
    ???
<frozen importlib._bootstrap>:1176: in _find_and_load
    ???
<frozen importlib._bootstrap>:1147: in _find_and_load_unlocked
    ???
<frozen importlib._bootstrap>:690: in _load_unlocked
    ???
<frozen importlib._bootstrap_external>:940: in exec_module
    ???
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
    ???
shapely/__init__.py:1: in <module>
    from shapely.lib import GEOSException  # NOQA
E   ModuleNotFoundError: No module named 'shapely.lib'
=========================== short test summary info ============================
ERROR  - ModuleNotFoundError: No module named 'shapely.lib'
!!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
=============================== 1 error in 0.08s ===============================

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It is related to this issue, #255262.
Changing the current directory is one of the workarounds.

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I noticed that cd $out works but decided against it because then it would run tests installed to $out and I am not sure all tests are installed (and if they should be).

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As the main investigator of #255262, I personally prefer cd $out - if we suspect upstream doesn't install all tests, perhaps we can check that by listing what gets installed in the package vs what's in the source? I doubt upstream won't install either all of none.

In any case, a link to #255262 near the workaround (which ever you'd eventually choose) would be great.

@ofborg ofborg bot requested review from imincik, nh2, sikmir and willcohen October 28, 2023 17:41
@ofborg ofborg bot added 10.rebuild-darwin: 11-100 This PR causes between 11 and 100 packages to rebuild on Darwin. 10.rebuild-linux: 11-100 This PR causes between 11 and 100 packages to rebuild on Linux. labels Oct 28, 2023
@jtojnar jtojnar requested a review from doronbehar October 29, 2023 09:02
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@ofborg build python311Packages.shapely

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Thank you. Version bump and tests workaround looks good to me.

@delroth delroth added 12.approvals: 1 This PR was reviewed and approved by one person. 12.approved-by: package-maintainer This PR was reviewed and approved by a maintainer listed in any of the changed packages. labels Oct 30, 2023
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As the main investigator of #255262, I personally prefer cd $out - if we suspect upstream doesn't install all tests, perhaps we can check that by listing what gets installed in the package vs what's in the source? I doubt upstream won't install either all of none.

In any case, a link to #255262 near the workaround (which ever you'd eventually choose) would be great.

I prefer cd $out as well. Current cp workaround might in theory prevent losing some test, but I wouldn't go this way until we know that this can happen.

@doronbehar doronbehar changed the title python3.pkgs.shapely: 2.0.1 → 2.0.2 python311Packages.shapely: 2.0.1 → 2.0.2 Nov 17, 2023
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Since more people expressed their support for cd $out vs the last implementation, I pushed a simple preCheck hook, along with a link to #255262 , which also includes a link to this PR as well.

@ofborg ofborg bot requested review from imincik and sikmir November 17, 2023 13:02
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Thanks, looks good.

@doronbehar doronbehar merged commit 3dda68e into NixOS:master Nov 17, 2023
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6.topic: python Python is a high-level, general-purpose programming language. 10.rebuild-darwin: 11-100 This PR causes between 11 and 100 packages to rebuild on Darwin. 10.rebuild-linux: 11-100 This PR causes between 11 and 100 packages to rebuild on Linux. 12.approvals: 1 This PR was reviewed and approved by one person. 12.approved-by: package-maintainer This PR was reviewed and approved by a maintainer listed in any of the changed packages.

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