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merge master#431

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Nic-Ma merged 7 commits intoNic-Ma:4687-fix-imagedatasetfrom
Project-MONAI:dev
Jul 13, 2022
Merged

merge master#431
Nic-Ma merged 7 commits intoNic-Ma:4687-fix-imagedatasetfrom
Project-MONAI:dev

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@Nic-Ma Nic-Ma commented Jul 13, 2022

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

mersad95zd and others added 7 commits July 8, 2022 20:06
Signed-off-by: mersad95zd <[email protected]>
* bc nonbreaking tests

Signed-off-by: Wenqi Li <[email protected]>

* update docstring

Signed-off-by: Wenqi Li <[email protected]>

* compatible collate

Signed-off-by: Wenqi Li <[email protected]>

* adds flag

Signed-off-by: Wenqi Li <[email protected]>

* update

Signed-off-by: Wenqi Li <[email protected]>

* fixes min tests

Signed-off-by: Wenqi Li <[email protected]>

* integration

Signed-off-by: Wenqi Li <[email protected]>

* default to metatensor

Signed-off-by: Wenqi Li <[email protected]>

* update

Signed-off-by: Wenqi Li <[email protected]>

* update baesd on comments, refactoring, more tests

Signed-off-by: Wenqi Li <[email protected]>

* debug typing

Signed-off-by: Wenqi Li <[email protected]>

* debug typing

Signed-off-by: Wenqi Li <[email protected]>

* debug typing

Signed-off-by: Wenqi Li <[email protected]>

* simplify, more tests

Signed-off-by: Wenqi Li <[email protected]>

* multisamples cropping

Signed-off-by: Wenqi Li <[email protected]>

* simplified utilities, docstrings

Signed-off-by: Wenqi Li <[email protected]>

* update based on comments

Signed-off-by: Wenqi Li <[email protected]>

* exclude in min

Signed-off-by: Wenqi Li <[email protected]>
* Create meaniou.py

Signed-off-by: Yashika Jain <[email protected]>

* Create test_compute_meaniou.py

Signed-off-by: Yashika Jain <[email protected]>

* Update __init__.py

Signed-off-by: Yashika Jain <[email protected]>

* Update metrics.rst

Signed-off-by: Yashika Jain <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Signed-off-by: Yashika Jain <[email protected]>

* Update test_compute_meaniou.py

Signed-off-by: Yashika Jain <[email protected]>

* Update meaniou.py

Signed-off-by: Yashika Jain <[email protected]>

* Update metrics.rst

Signed-off-by: Yashika Jain <[email protected]>

* Update __init__.py

Signed-off-by: Yashika Jain <[email protected]>

* Update meaniou.py

Signed-off-by: Yashika Jain <[email protected]>

* Update test_compute_meaniou.py

Signed-off-by: Yashika Jain <[email protected]>

* Update metrics.rst

Signed-off-by: Yashika Jain <[email protected]>

* Update test_compute_meaniou.py

Signed-off-by: Yashika Jain <[email protected]>

* Update test_compute_meaniou.py

Signed-off-by: Yashika Jain <[email protected]>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Nic Ma <[email protected]>
* fixes shape fallback

Signed-off-by: Wenqi Li <[email protected]>

* fixes #4655

Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] enhance metrics doc with example

Signed-off-by: Nic Ma <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* [DLMED] update according to comments

Signed-off-by: Nic Ma <[email protected]>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* fixes pad-collate

Signed-off-by: Wenqi Li <[email protected]>

* adds tests

Signed-off-by: Wenqi Li <[email protected]>

* update based on comments

Signed-off-by: Wenqi Li <[email protected]>
* blend_images: voxel-wise alpha

Signed-off-by: Richard Brown <[email protected]>

* linting is wrong

Signed-off-by: Richard Brown <[email protected]>

* fixes

Signed-off-by: Richard Brown <[email protected]>
@Nic-Ma Nic-Ma merged commit 383a080 into Nic-Ma:4687-fix-imagedataset Jul 13, 2022
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5 participants