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merge master#404

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Nic-Ma merged 23 commits intoNic-Ma:4148-update-enginesfrom
Project-MONAI:dev
Apr 20, 2022
Merged

merge master#404
Nic-Ma merged 23 commits intoNic-Ma:4148-update-enginesfrom
Project-MONAI:dev

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@Nic-Ma Nic-Ma commented Apr 20, 2022

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

ericspod and others added 23 commits April 4, 2022 19:38
* Adding discussion on format to bundle specification

Signed-off-by: Eric Kerfoot <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates:
- [github.com/asottile/pyupgrade: v2.31.0 → v2.31.1](asottile/pyupgrade@v2.31.0...v2.31.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* [DLMED] change PatchIter to be a transform

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add dict transform

Signed-off-by: Nic Ma <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* [DLMED] add unit tests

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] store coords in dict

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] restore the doc-string

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] store more info

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <[email protected]>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Fix a logical error in level verification

Signed-off-by: Behrooz <[email protected]>
* Refactor `if` expression

* update clang format

Signed-off-by: Wenqi Li <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com>
Co-authored-by: monai-bot <[email protected]>
* SplitDim

Signed-off-by: Richard Brown <[email protected]>

* fix

Signed-off-by: Richard Brown <[email protected]>

* fixes

Signed-off-by: Richard Brown <[email protected]>

* fix update meta

Signed-off-by: Richard Brown <[email protected]>

* update docs

Signed-off-by: Wenqi Li <[email protected]>

Co-authored-by: Wenqi Li <[email protected]>
* update mmar tests

Signed-off-by: Wenqi Li <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* fixes pylint error

Signed-off-by: Wenqi Li <[email protected]>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* extend mlp

Signed-off-by: Wenqi Li <[email protected]>

* 0 mlp_dim

Signed-off-by: Wenqi Li <[email protected]>

* update based on comments

Signed-off-by: Wenqi Li <[email protected]>
* added 2D (normalized) surface dice metric

Signed-off-by: Silvia Seidlitz <[email protected]>

* exclude from min tests

Signed-off-by: Wenqi Li <[email protected]>

* more detailled docstring

Signed-off-by: Silvia Seidlitz <[email protected]>
* Fix doc strings error

Signed-off-by: Yiheng Wang <[email protected]>

* remove duplicate places

Signed-off-by: Yiheng Wang <[email protected]>
* update sys req

Signed-off-by: Wenqi Li <[email protected]>

* temp test

Signed-off-by: Wenqi Li <[email protected]>

* update code for torch>=1.7

Signed-off-by: Wenqi Li <[email protected]>

* temp tests

Signed-off-by: Wenqi Li <[email protected]>

* fixes tests

Signed-off-by: Wenqi Li <[email protected]>

* autofix

Signed-off-by: Wenqi Li <[email protected]>

* fixes import

Signed-off-by: Wenqi Li <[email protected]>

* clear cache

Signed-off-by: Wenqi Li <[email protected]>

* update based on comments

Signed-off-by: Wenqi Li <[email protected]>

* remove temp cmd

Signed-off-by: Wenqi Li <[email protected]>
* Update the existing functionality to comply with the `torchscript.jit.script` function.

Signed-off-by: Ramon Emiliani <[email protected]>
* meta tensor

Signed-off-by: Richard Brown <[email protected]>
* [DLMED] add kwargs for to() API

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] fix typo

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix flake8

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <[email protected]>

Co-authored-by: monai-bot <[email protected]>
* update meta tensor api

Signed-off-by: Wenqi Li <[email protected]>

* update based on comments

Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* no skip if before pytorch 1.7

Signed-off-by: Richard Brown <[email protected]>

* fix

Signed-off-by: Richard Brown <[email protected]>

* fix

Signed-off-by: Richard Brown <[email protected]>
* [DLMED] fix typo in bundle scripts

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add support for AMP args

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] fix flake8

Signed-off-by: Nic Ma <[email protected]>

Co-authored-by: monai-bot <[email protected]>
@Nic-Ma Nic-Ma merged commit c3ae03a into Nic-Ma:4148-update-engines Apr 20, 2022
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8 participants