Merged
Conversation
* Refactor some variable names Signed-off-by: Behrooz <[email protected]> * Fix SplitOnGrid issue with numpy backend Signed-off-by: Behrooz <[email protected]> * Add unittest to cover the fixed issue Signed-off-by: Behrooz <[email protected]> * Rename c_image to n_channels Signed-off-by: Behrooz <[email protected]>
* [DLMED] fix threshold issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
* Adding repeats option to ThreadDataLoader Signed-off-by: Eric Kerfoot <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Adding repeats option to ThreadDataLoader Signed-off-by: Eric Kerfoot <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * Update thread_buffer.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Signed-off-by: Eric Kerfoot <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: monai-bot <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] fix None value Signed-off-by: Nic Ma <[email protected]> * [DLMED] add unit tests Signed-off-by: Nic Ma <[email protected]>
* add dints model Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * rename scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * rename scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Move stem out of dints * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add test dints cell, mixop and dints bug fix * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Change dints.stem * update scripts Signed-off-by: dongy <[email protected]> * adds doc; update test_factorized_reduce.py Signed-off-by: Wenqi Li <[email protected]> * update docstring of mixops Signed-off-by: Wenqi Li <[email protected]> * ReLU -> Acti Signed-off-by: Wenqi Li <[email protected]> * update mixops cell Signed-off-by: Wenqi Li <[email protected]> * remove forward() Signed-off-by: Wenqi Li <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Add dints comments * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add device to dints and fix unit test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixes typos Signed-off-by: Wenqi Li <[email protected]> * fix docstrings Signed-off-by: Wenqi Li <[email protected]> * fix docstrings Signed-off-by: Wenqi Li <[email protected]> * fixes tests Signed-off-by: Wenqi Li <[email protected]> * update mixop and cell Signed-off-by: Wenqi Li <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * Add dints comments * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Remove arch_codes in forward * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add Dints weight parameter function * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * Fix 2D Dints bugs, unit testing, and commenting * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * dints/dints_blocks updates Signed-off-by: Wenqi Li <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update ram cost Signed-off-by: Wenqi Li <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * [DLMED] add TorchScript Signed-off-by: Nic Ma <[email protected]> * Fix dints bug, add comments, torchscript support * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update scripts Signed-off-by: dongy <[email protected]> * update docstrings; remoted `is_search` Signed-off-by: Wenqi Li <[email protected]> * torchscript dints inference Signed-off-by: Wenqi Li <[email protected]> * test fixes Signed-off-by: Wenqi Li <[email protected]> * fixes gpu tests Signed-off-by: Wenqi Li <[email protected]> * fixes dints cell tests Signed-off-by: Wenqi Li <[email protected]> * skip for previous torch versions Signed-off-by: Wenqi Li <[email protected]> * inplace grads Signed-off-by: Wenqi Li <[email protected]> * remove warning msg Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: dongy <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Yufan He <[email protected]> Co-authored-by: Wenqi Li <[email protected]> Co-authored-by: Nic Ma <[email protected]>
* [DLMED] add frame_dim Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI test Signed-off-by: Nic Ma <[email protected]> * [DLMED] remove doc-string of args "currently not used" Signed-off-by: Nic Ma <[email protected]>
* whats new in 0.8 Signed-off-by: Wenqi Li <[email protected]> * updated based on comments Signed-off-by: Wenqi Li <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Nic Ma <[email protected]>
* update changelog for v0.8.0 Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Nic Ma <[email protected]>
* [DLMED] update highlights for v0.8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] add tutorial link Signed-off-by: Nic Ma <[email protected]> * [DLMED] add MLFlow related Signed-off-by: Nic Ma <[email protected]> * [DLMED] update description and charts Signed-off-by: Nic Ma <[email protected]> * [DLMED] update chart name Signed-off-by: Nic Ma <[email protected]> * update docs Signed-off-by: Wenqi Li <[email protected]> * update dints link Signed-off-by: Wenqi Li <[email protected]> * update highlights Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* fixes typos Signed-off-by: Wenqi Li <[email protected]> * fixes typos Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>
* fixes crop types Signed-off-by: Wenqi Li <[email protected]> * fixes dtypes Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] enhance doc Signed-off-by: Nic Ma <[email protected]> * [DLMED] update based on Yiheng's comments Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add channel dim Signed-off-by: Nic Ma <[email protected]> * [DLMED] add RGB support Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
* [DLMED] add support for other pickle Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] test flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] test flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>
* fixes pickle mod Signed-off-by: Wenqi Li <[email protected]> * update pickle Signed-off-by: Wenqi Li <[email protected]> * docstring Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* [DLMED] enhance not-nan reduction Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
…ks (#3419) * Update segresnet_block.py making the activation function a parameter to the class of the ResBlock * Update segresnet.py * passing activation to the residual blocks * little change * signed Signed-off-by: Patricio Astudillo <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update Signed-off-by: Wenqi Li <[email protected]> * [DLMED] add args and update default (#3418) Signed-off-by: Nic Ma <[email protected]> Signed-off-by: Wenqi Li <[email protected]> * update docstrings Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Patricio Astudillo <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Wenqi Li <[email protected]> Co-authored-by: Nic Ma <[email protected]>
* update vitautoenc Signed-off-by: Wenqi Li <[email protected]> * update based on the comments; compatibility with the previous model weights Signed-off-by: Wenqi Li <[email protected]>
* Update WSIReader level/location/size calculation Signed-off-by: Behrooz <[email protected]> * Update location downsampling Signed-off-by: Behrooz <[email protected]> * Update tests and add a new test case Signed-off-by: Behrooz <[email protected]> * Update few names and logics Signed-off-by: Behrooz <[email protected]> * Fix the dependency issue Signed-off-by: Behrooz <[email protected]> * Check for imagecodecs + tifffile Signed-off-by: Behrooz <[email protected]> * Remove new test case that uses too much memory Signed-off-by: Behrooz <[email protected]> * Add new case and ignore level=0 for TiffFile Signed-off-by: Behrooz <[email protected]> * Address comments Signed-off-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* Update TiffFile backend to read only the entire image Signed-off-by: Behrooz <[email protected]>
* [DLMED] extract write logic Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
* [DLMED] add dataframe Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance CSV iterable dataset Signed-off-by: Nic Ma <[email protected]> * [DLMED] add unit tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typehints Signed-off-by: Nic Ma <[email protected]> * [DLMED] add comment Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix file close issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix doc Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
* [DLMED] add BaseWorkflow Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] add *args, **kwargs Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>
* [DLMED] fix deprecated arg Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* ResampleToMatch Signed-off-by: Richard Brown <[email protected]> * mypy Signed-off-by: Richard Brown <[email protected]> * safe get, fixes min test Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* update contrib guide Signed-off-by: Wenqi Li <[email protected]> * update testing data Signed-off-by: Wenqi Li <[email protected]> * fixes typos Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Yiheng Wang <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* intensity augmentation transforms Signed-off-by: yc7620 <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * mapping via bitbucket operation Signed-off-by: yc7620 <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: yc7620 <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] fix margin region in crop Signed-off-by: Nic Ma <[email protected]> * [DLMED] add to other transforms Signed-off-by: Nic Ma <[email protected]> * [DLMED] update arg name Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* Add failing test Signed-off-by: Sven Koitka <[email protected]> * Fix reshape after ViT Signed-off-by: Sven Koitka <[email protected]> * Remove unused import Signed-off-by: Sven Koitka <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Yiheng Wang <[email protected]>
* [DLMED] add config parser Signed-off-by: Nic Ma <[email protected]> * [DLMED] simplify parse logic Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more function tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix torchvision tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance update_config to support multiple items Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance doc and unit tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] clear API Signed-off-by: Nic Ma <[email protected]> * [DLMED] simplify usage APIs Signed-off-by: Nic Ma <[email protected]> * [DLMED] support root config Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix update reference typo Signed-off-by: Nic Ma <[email protected]> * revise APIs and docstrings Signed-off-by: Wenqi Li <[email protected]> * remove->discard Signed-off-by: Wenqi Li <[email protected]> * [DLMED] minor change Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* enhance to use spatial_size Signed-off-by: Wenqi Li <[email protected]> * update tests Signed-off-by: Wenqi Li <[email protected]> * fixes unit test Signed-off-by: Wenqi Li <[email protected]> * adds unit tests Signed-off-by: Wenqi Li <[email protected]> * check that metadata matches Signed-off-by: Richard Brown <[email protected]> * add checks to test Signed-off-by: Richard Brown <[email protected]> Co-authored-by: Richard Brown <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* Remove dead link from highlights.md Signed-off-by: Ioannis Valasakis <[email protected]>
* fix non intensity error Signed-off-by: Yiheng Wang <[email protected]> * remove useless torch mod Signed-off-by: Yiheng Wang <[email protected]> * convert type before return Signed-off-by: Yiheng Wang <[email protected]> * update convert Signed-off-by: Yiheng Wang <[email protected]>
* Add SliceInferer for slice-by-slice infer Signed-off-by: Suraj Pai <[email protected]>
Signed-off-by: Yiheng Wang <[email protected]>
* Update CSVDataset in dataset.py `kwargs` argument currently addresses merge operation. There is no way to change `kwargs` for `read_csv ()` call (e.g. to change delimiter from standard `,` to `\t`. Suggestion: Have `kwargs_read_csv` and `kwargs_merge` arguments to allow separate and finer user-control over both loading & merging mechanism.
* inverse ResampleToMatchd Signed-off-by: Richard Brown <[email protected]> * ignore Signed-off-by: Richard Brown <[email protected]>
* fix unittest error Signed-off-by: Yiheng Wang <[email protected]> * unify version Signed-off-by: Yiheng Wang <[email protected]>
* Revert "inverse ResampleToMatchd (#3856)" This reverts commit 82ec2fe. Signed-off-by: Wenqi Li <[email protected]> * Revert "Revert "inverse ResampleToMatchd (#3856)"" This reverts commit 6698ef5. Signed-off-by: Wenqi Li <[email protected]> * support of writer names Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>
* add shape info when raising errors Signed-off-by: Yiheng Wang <[email protected]>
* update Transchex model Signed-off-by: ahatamizadeh <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add config parser Signed-off-by: Nic Ma <[email protected]> * [DLMED] simplify parse logic Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more function tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix torchvision tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] add standard run API Signed-off-by: Nic Ma <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [DLMED] enhance update_config to support multiple items Signed-off-by: Nic Ma <[email protected]> * [DLMED] update API Signed-off-by: Nic Ma <[email protected]> * [DLMED] simplify API Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance doc and unit tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] clear API Signed-off-by: Nic Ma <[email protected]> * [DLMED] simplify usage APIs Signed-off-by: Nic Ma <[email protected]> * [DLMED] support root config Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix update reference typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] update usage API Signed-off-by: Nic Ma <[email protected]> * revise APIs and docstrings Signed-off-by: Wenqi Li <[email protected]> * remove->discard Signed-off-by: Wenqi Li <[email protected]> * [DLMED] minor change Signed-off-by: Nic Ma <[email protected]> * [DLMED] update code Signed-off-by: Nic Ma <[email protected]> * update usage Signed-off-by: Wenqi Li <[email protected]> * [DLMED] update doc Signed-off-by: Nic Ma <[email protected]> * [DLMED] add end-to-end test Signed-off-by: Nic Ma <[email protected]> * [DLMED] update doc Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix optional import Signed-off-by: Nic Ma <[email protected]> * [DLMED] refine APIs Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] add support to only use part of the file to override Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] update to latest Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update `fire` supported dict arg Signed-off-by: Nic Ma <[email protected]> * [DLMED] add examples to doc-string Signed-off-by: Nic Ma <[email protected]> * [DLMED] skip windows test for paths Signed-off-by: Nic Ma <[email protected]> * [DLMED] skip windows Signed-off-by: Nic Ma <[email protected]> * [DLMED] update windows Signed-off-by: Nic Ma <[email protected]> * [DLMED] update command Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix windows test Signed-off-by: Nic Ma <[email protected]> * [DLMED] construct class Signed-off-by: Nic Ma <[email protected]> * [DLMED] restore design Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix args override Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] test windows Signed-off-by: Nic Ma <[email protected]> * [DLMED] test windows Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] refactor config reading logic Signed-off-by: Nic Ma <[email protected]> * [DLMED] add doc-string Signed-off-by: Nic Ma <[email protected]> * [DLMED] add export and test Signed-off-by: Nic Ma <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * python -m monai.bundle Signed-off-by: Wenqi Li <[email protected]> * fixes doc tests Signed-off-by: Wenqi Li <[email protected]> * [DLMED] enhance test Signed-off-by: Nic Ma <[email protected]> * rel import Signed-off-by: Wenqi Li <[email protected]> * [DLMED] refine macro Signed-off-by: Nic Ma <[email protected]> * fixes flake8 f401 Signed-off-by: Wenqi Li <[email protected]> * mv to monai.bundle Signed-off-by: Wenqi Li <[email protected]> * fixes split_path_id, update docstrings Signed-off-by: Wenqi Li <[email protected]> * fixes mypy Signed-off-by: Wenqi Li <[email protected]> * update cli, update according to the comments Signed-off-by: Wenqi Li <[email protected]> * [DLMED] fix typo in doc-string Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to discussion Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix path_id match Signed-off-by: Nic Ma <[email protected]> * revise according to the comments Signed-off-by: Wenqi Li <[email protected]> * [DLMED] update config item Signed-off-by: Nic Ma <[email protected]> * [DLMED] update patterns Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance disabled Signed-off-by: Nic Ma <[email protected]> * special chars to utils Signed-off-by: Wenqi Li <[email protected]> * remove circular import Signed-off-by: Wenqi Li <[email protected]> * configreader -> configparser following cpython/configparser Signed-off-by: Wenqi Li <[email protected]> * printing Signed-off-by: Wenqi Li <[email protected]> * fixes typing Signed-off-by: Wenqi Li <[email protected]> * [DLMED] unify "_name_" and "_path_" Signed-off-by: Nic Ma <[email protected]> * [DLMED] update to "_target_" Signed-off-by: Nic Ma <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Wenqi Li <[email protected]>
Signed-off-by: Yiheng Wang <[email protected]>
* Adding archive specification document Signed-off-by: Eric Kerfoot <[email protected]> * Adding archive specification document Signed-off-by: Eric Kerfoot <[email protected]> * Adding archive specification document Signed-off-by: Eric Kerfoot <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Adding archive specification document Signed-off-by: Eric Kerfoot <[email protected]> * Adding archive specification document Signed-off-by: Eric Kerfoot <[email protected]> * Adding archive specification document Signed-off-by: Eric Kerfoot <[email protected]> * Updated specification Signed-off-by: Eric Kerfoot <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Updated specification Signed-off-by: Eric Kerfoot <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: GreySeaWolf <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* fixes #3921 Signed-off-by: Wenqi Li <[email protected]> * fixes Signed-off-by: Wenqi Li <[email protected]> * fixes mypy Signed-off-by: Wenqi Li <[email protected]> * remove temp tests Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add ignore_data API Signed-off-by: Nic Ma <[email protected]> * [DLMED] optimize the API Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix mypy Signed-off-by: Nic Ma <[email protected]>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Fixes # .
Description
A few sentences describing the changes proposed in this pull request.
Status
Ready/Work in progress/Hold
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests.make htmlcommand in thedocs/folder.