merge master#371
Merged
Nic-Ma merged 363 commits intoNic-Ma:3795-ensure-channel-firstfrom Feb 12, 2022
Merged
Conversation
…tatement (#3147) * Refactor unnecessary `else` / `elif` when `if` block has a `return` statement * black --skip-magic-trailing-comma Signed-off-by: Wenqi Li <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> Co-authored-by: monai-bot <[email protected]>
* update versioning Signed-off-by: Wenqi Li <[email protected]> * build docker Signed-off-by: Wenqi Li <[email protected]> * install docker Signed-off-by: Wenqi Li <[email protected]> * remove selfhosted Signed-off-by: Wenqi Li <[email protected]> * update docs Signed-off-by: Wenqi Li <[email protected]> * ubuntu cpu tests Signed-off-by: Wenqi Li <[email protected]> * full tests Signed-off-by: Wenqi Li <[email protected]> * test docker options Signed-off-by: Wenqi Li <[email protected]> * full tests Signed-off-by: Wenqi Li <[email protected]> * full tests Signed-off-by: Wenqi Li <[email protected]> * exclude open slide tests Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * full tests Signed-off-by: Wenqi Li <[email protected]> * temp checkout Signed-off-by: Wenqi Li <[email protected]> * full tests Signed-off-by: Wenqi Li <[email protected]> * full tests Signed-off-by: Wenqi Li <[email protected]> * fixes flake8 error Signed-off-by: Wenqi Li <[email protected]> * skip weights downloading when http error out Signed-off-by: Wenqi Li <[email protected]>
* temp tests Signed-off-by: Wenqi Li <[email protected]> * adds doker Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * check branches Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * fixes cmp Signed-off-by: Wenqi Li <[email protected]> * remove temp tests Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add tutorial link Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] update spacing and orientation transforms Signed-off-by: Nic Ma <[email protected]> * [DLMED] update others Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix test Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]>
* update to torch 1.10 Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * fixes for torch 1.10 Signed-off-by: Wenqi Li <[email protected]> * fixes coverage tests Signed-off-by: Wenqi Li <[email protected]> * fixes tests Signed-off-by: Wenqi Li <[email protected]> * type fixes Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit cb3e0c7. Signed-off-by: Wenqi Li <[email protected]> * fixes tests Signed-off-by: Wenqi Li <[email protected]> * fixes for windows Signed-off-by: Wenqi Li <[email protected]> * fixes integration Signed-off-by: Wenqi Li <[email protected]> * fixes #3171 Signed-off-by: Wenqi Li <[email protected]> * temp fix windows Signed-off-by: Wenqi Li <[email protected]>
…3158) * [DLMED] add example in doc-string Signed-off-by: Nic Ma <[email protected]> * [DLMED] add example about copy_cache Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>
* revise docstrings Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * fixes windows tests Signed-off-by: Wenqi Li <[email protected]>
* adds util logger Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* [DLMED] add scale_datalist Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] add utitlity Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI for old PyTorch Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI issue Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
) * Torch `BoundingRect`, `FillHoles`, VoteEnsemble` Signed-off-by: Richard Brown <[email protected]> * fix Signed-off-by: Richard Brown <[email protected]> * fix Signed-off-by: Richard Brown <[email protected]> * fix Signed-off-by: Richard Brown <[email protected]> * skip test_fill_holesd Signed-off-by: Richard Brown <[email protected]> * merge fix Signed-off-by: Richard Brown <[email protected]> * fixes Signed-off-by: Richard Brown <[email protected]> * np->np/pt->pt Signed-off-by: Richard Brown <[email protected]> * no type check Signed-off-by: Richard Brown <[email protected]> * return ndarrayortensor Signed-off-by: Richard Brown <[email protected]> * MeanEnsemble Signed-off-by: Richard Brown <[email protected]>
* [DLMED] add preparebatch Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix min tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix min tests Signed-off-by: Nic Ma <[email protected]>
* [DLMED] add backend Signed-off-by: Nic Ma <[email protected]> * [DLMED] add backend Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix PyTorch 1.5.1 test Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more tests Signed-off-by: Nic Ma <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* squeeze non-spatial dims in nib-reader Signed-off-by: Bryn Lloyd <[email protected]> * fix: add squeeze_non_spatial_dims=False option Signed-off-by: Bryn Lloyd <[email protected]> * fix: add docstring for arg Signed-off-by: Bryn Lloyd <[email protected]> * fix: add docstring for arg Signed-off-by: Bryn Lloyd <[email protected]> * fix: typos Signed-off-by: Bryn Lloyd <[email protected]> Co-authored-by: Bryn Lloyd <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
remove flooring
Signed-off-by: Nic Ma <[email protected]>
* Fixes focal loss when reduction=none Signed-off-by: joncrall <[email protected]> * Added doctest example, fixed mypy errors Signed-off-by: joncrall <[email protected]> * Linting and test fixes Signed-off-by: joncrall <[email protected]> * Change dice loss to return broadcastable reductions Signed-off-by: joncrall <[email protected]> * Fixed backwards compatibility issues Signed-off-by: joncrall <[email protected]> * Fix masked loss test Signed-off-by: joncrall <[email protected]>
* [DLMED] enhance document Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* Torch `ProbNMS`, `LabelFilter` Signed-off-by: Richard Brown <[email protected]> * fix test_probnmsd Signed-off-by: Richard Brown <[email protected]> * fix for older pt Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] enhance the doc-string Signed-off-by: Nic Ma <[email protected]> * [DLMED] add shuffle Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] change to ShuffleBuffer Signed-off-by: Nic Ma <[email protected]> * update according to discussions Signed-off-by: Wenqi Li <[email protected]> * [DLMED] add multi-workers support Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix docs Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] improve perf Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] add metrics check Signed-off-by: Nic Ma <[email protected]> * [DLMED] update workflow Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reduction Signed-off-by: Nic Ma <[email protected]> * [DLMED] add reduction to metric handlers Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* fixes grid_sample, interpolate URLs Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>
* add non-determinism tips Signed-off-by: Yiheng Wang <[email protected]> * fix the name error Signed-off-by: Yiheng Wang <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* fixes test Signed-off-by: Wenqi Li <[email protected]> * skip when downloading fails Signed-off-by: Wenqi Li <[email protected]>
* Remove assert statement from non-test files * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> Co-authored-by: monai-bot <[email protected]>
* ignore 60.6.0 Signed-off-by: Wenqi Li <[email protected]> * workaround #3752 Signed-off-by: Wenqi Li <[email protected]> * fixes windows issue Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] update to 22.01 Signed-off-by: Nic Ma <[email protected]> * [DLMED] update environment Signed-off-by: Nic Ma <[email protected]>
* update unit tests intensity range percentiles Signed-off-by: Wenqi Li <[email protected]> * fixes channel wise tests Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add HashCacheDataset Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more test Signed-off-by: Nic Ma <[email protected]> * [DLMED] skip min test Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] refine TTA Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance TTA Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] refine example in doc-string Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * add to optimize tta Signed-off-by: Richard Brown <[email protected]> * update Signed-off-by: Richard Brown <[email protected]> * .item for np.ndarray too Signed-off-by: Richard Brown <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Richard Brown <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] enhance missing key error Signed-off-by: Nic Ma <[email protected]> * [DLMED] update doc Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
* temp spatial_resample Signed-off-by: Wenqi Li <[email protected]> * fixes resampling Signed-off-by: Wenqi Li <[email protected]> * fixes precisions Signed-off-by: Wenqi Li <[email protected]> * update dict version Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * adds docs Signed-off-by: Wenqi Li <[email protected]> * copy grid for resampling Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * remove normalize coordinates Signed-off-by: Wenqi Li <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * try to fix #3621 (#3673) Signed-off-by: Wenqi Li <[email protected]> * fixes typing Signed-off-by: Wenqi Li <[email protected]> * fixes grid_sample, interpolate URLs Signed-off-by: Wenqi Li <[email protected]> * simplify norm_coords Signed-off-by: Wenqi Li <[email protected]> * update docstring Signed-off-by: Wenqi Li <[email protected]> * update moveaxis Signed-off-by: Wenqi Li <[email protected]> * spatial sample tests Signed-off-by: Wenqi Li <[email protected]> * additional tests spatial resample Signed-off-by: Wenqi Li <[email protected]> * test invert saptial resample Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * rtol assert close Signed-off-by: Wenqi Li <[email protected]> * fixes TF32 tests Signed-off-by: Wenqi Li <[email protected]> * smaller tests Signed-off-by: Wenqi Li <[email protected]> * skip when quick testing Signed-off-by: Wenqi Li <[email protected]> * comp tensor and ndarray Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * fixes tests Signed-off-by: Wenqi Li <[email protected]> * try to use torch.solve Signed-off-by: Wenqi Li <[email protected]> * Revert "fixes tests" This reverts commit e532490. Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * fixes test_affined Signed-off-by: Wenqi Li <[email protected]> * default to float32 rotate/randrotate Signed-off-by: Wenqi Li <[email protected]> * workaround for #3752 Signed-off-by: Wenqi Li <[email protected]> * default to float32 rotate/randrotate Signed-off-by: Wenqi Li <[email protected]> * temp test Signed-off-by: Wenqi Li <[email protected]> * update docstring Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: monai-bot <[email protected]>
* [DLMED] fix PadListCollate issue Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>
* update based on comments Signed-off-by: Wenqi Li <[email protected]> * -Wmaybe-uninitialized Signed-off-by: Wenqi Li <[email protected]>
* temp spatial_resample Signed-off-by: Wenqi Li <[email protected]> * fixes resampling Signed-off-by: Wenqi Li <[email protected]> * fixes precisions Signed-off-by: Wenqi Li <[email protected]> * update dict version Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * adds docs Signed-off-by: Wenqi Li <[email protected]> * copy grid for resampling Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * remove normalize coordinates Signed-off-by: Wenqi Li <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * try to fix #3621 (#3673) Signed-off-by: Wenqi Li <[email protected]> * fixes typing Signed-off-by: Wenqi Li <[email protected]> * fixes grid_sample, interpolate URLs Signed-off-by: Wenqi Li <[email protected]> * simplify norm_coords Signed-off-by: Wenqi Li <[email protected]> * update docstring Signed-off-by: Wenqi Li <[email protected]> * update moveaxis Signed-off-by: Wenqi Li <[email protected]> * spatial sample tests Signed-off-by: Wenqi Li <[email protected]> * additional tests spatial resample Signed-off-by: Wenqi Li <[email protected]> * test invert saptial resample Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * rtol assert close Signed-off-by: Wenqi Li <[email protected]> * fixes TF32 tests Signed-off-by: Wenqi Li <[email protected]> * smaller tests Signed-off-by: Wenqi Li <[email protected]> * skip when quick testing Signed-off-by: Wenqi Li <[email protected]> * comp tensor and ndarray Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * fixes tests Signed-off-by: Wenqi Li <[email protected]> * try to use torch.solve Signed-off-by: Wenqi Li <[email protected]> * temp updates Signed-off-by: Wenqi Li <[email protected]> * enhance typing Signed-off-by: Wenqi Li <[email protected]> * temp test Signed-off-by: Wenqi Li <[email protected]> * fixes Signed-off-by: Wenqi Li <[email protected]> * Revert "temp test" This reverts commit 6200a38. Signed-off-by: Wenqi Li <[email protected]> * enhance types Signed-off-by: Wenqi Li <[email protected]> * update util Signed-off-by: Wenqi Li <[email protected]> * reverse workaround Signed-off-by: Wenqi Li <[email protected]> * formatting Signed-off-by: Wenqi Li <[email protected]> * update type def. Signed-off-by: Wenqi Li <[email protected]> Signed-off-by: Wenqi Li <[email protected]> * temp test Signed-off-by: Wenqi Li <[email protected]> * warn unused Signed-off-by: Wenqi Li <[email protected]> * remote ignore Signed-off-by: Wenqi Li <[email protected]> * Revert "warn unused" This reverts commit e645807. Signed-off-by: Wenqi Li <[email protected]> * Revert "temp test" This reverts commit ddc4770. Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: monai-bot <[email protected]>
* [DLMED] add check for devices Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* temp spatial_resample Signed-off-by: Wenqi Li <[email protected]> * fixes resampling Signed-off-by: Wenqi Li <[email protected]> * fixes precisions Signed-off-by: Wenqi Li <[email protected]> * update dict version Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * adds docs Signed-off-by: Wenqi Li <[email protected]> * copy grid for resampling Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * remove normalize coordinates Signed-off-by: Wenqi Li <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * try to fix #3621 (#3673) Signed-off-by: Wenqi Li <[email protected]> * fixes typing Signed-off-by: Wenqi Li <[email protected]> * fixes grid_sample, interpolate URLs Signed-off-by: Wenqi Li <[email protected]> * simplify norm_coords Signed-off-by: Wenqi Li <[email protected]> * update docstring Signed-off-by: Wenqi Li <[email protected]> * update moveaxis Signed-off-by: Wenqi Li <[email protected]> * spatial sample tests Signed-off-by: Wenqi Li <[email protected]> * additional tests spatial resample Signed-off-by: Wenqi Li <[email protected]> * test invert saptial resample Signed-off-by: Wenqi Li <[email protected]> * adds a base writer and an itk writer Signed-off-by: Wenqi Li <[email protected]> * update docstrings Signed-off-by: Wenqi Li <[email protected]> * remove return self Signed-off-by: Wenqi Li <[email protected]> * adds reorient_spatial_axes Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * sync 3701 Signed-off-by: Wenqi Li <[email protected]> * try to fix #3766 Signed-off-by: Wenqi Li <[email protected]> * revise docstring to be concise Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * 3765 Enhance `create_multigpu_supervised_XXX` for distributed (#3768) * [DLMED] add check for devices Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * update to support dynamic spatial_size Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] enhance logger Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] update doc Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix packaging test Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] remove typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] totally update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update handlers Signed-off-by: Nic Ma <[email protected]> * [DLMED] update tutorial link Signed-off-by: Nic Ma <[email protected]>
* temp spatial_resample Signed-off-by: Wenqi Li <[email protected]> * fixes resampling Signed-off-by: Wenqi Li <[email protected]> * fixes precisions Signed-off-by: Wenqi Li <[email protected]> * update dict version Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * adds docs Signed-off-by: Wenqi Li <[email protected]> * copy grid for resampling Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * remove normalize coordinates Signed-off-by: Wenqi Li <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * try to fix #3621 (#3673) Signed-off-by: Wenqi Li <[email protected]> * fixes typing Signed-off-by: Wenqi Li <[email protected]> * fixes grid_sample, interpolate URLs Signed-off-by: Wenqi Li <[email protected]> * simplify norm_coords Signed-off-by: Wenqi Li <[email protected]> * update docstring Signed-off-by: Wenqi Li <[email protected]> * update moveaxis Signed-off-by: Wenqi Li <[email protected]> * spatial sample tests Signed-off-by: Wenqi Li <[email protected]> * additional tests spatial resample Signed-off-by: Wenqi Li <[email protected]> * test invert saptial resample Signed-off-by: Wenqi Li <[email protected]> * adds a base writer and an itk writer Signed-off-by: Wenqi Li <[email protected]> * update docstrings Signed-off-by: Wenqi Li <[email protected]> * remove return self Signed-off-by: Wenqi Li <[email protected]> * adds reorient_spatial_axes Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * sync 3701 Signed-off-by: Wenqi Li <[email protected]> * try to fix #3766 Signed-off-by: Wenqi Li <[email protected]> * revise docstring to be concise Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * 3765 Enhance `create_multigpu_supervised_XXX` for distributed (#3768) * [DLMED] add check for devices Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * update to support dynamic spatial_size Signed-off-by: Wenqi Li <[email protected]> * adds nibabel pil writers Signed-off-by: Wenqi Li <[email protected]> * remove unused ignore Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add save_state utility Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] add atomic and func Signed-off-by: Nic Ma <[email protected]> * [DLMED] refactor saving logic Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] restore persistent dataset Signed-off-by: Nic Ma <[email protected]> * [DLMED] simplify kwargs Signed-off-by: Nic Ma <[email protected]>
* make vit support torchscript Signed-off-by: Yiheng Wang <[email protected]> * add torch version restriction Signed-off-by: Yiheng Wang <[email protected]> * change skip decorator order Signed-off-by: Yiheng Wang <[email protected]> * remove extra cls Signed-off-by: Yiheng Wang <[email protected]>
…g_saver/writer (#3773) * update saveimage and writer selector Signed-off-by: Wenqi Li <[email protected]> * more tests Signed-off-by: Wenqi Li <[email protected]> * more tests Signed-off-by: Wenqi Li <[email protected]> * adds saving loading tests Signed-off-by: Wenqi Li <[email protected]> * fixes #3783 Signed-off-by: Wenqi Li <[email protected]> * enhance import checks Signed-off-by: Wenqi Li <[email protected]> * warn to exception; int check Signed-off-by: Wenqi Li <[email protected]> * fixes tests Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * fixes #3787 Signed-off-by: Wenqi Li <[email protected]> * unit testing Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* update largest cc function Signed-off-by: Dong Yang <[email protected]> * update largest cc function Signed-off-by: Dong Yang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update largest cc function Signed-off-by: Dong Yang <[email protected]> * update largest cc function Signed-off-by: Dong Yang <[email protected]> * update largest cc function Signed-off-by: Dong Yang <[email protected]> * update largest cc function Signed-off-by: Dong Yang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update largest cc function Signed-off-by: Dong Yang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update largest cc function Signed-off-by: Dong Yang <[email protected]> * update largest cc function Signed-off-by: Dong Yang <[email protected]> * update largest cc function Signed-off-by: Dong Yang <[email protected]> * update largest cc function Signed-off-by: Dong Yang <[email protected]> * update largest cc function Signed-off-by: Dong Yang <[email protected]> * update repo Signed-off-by: dongy <[email protected]> Co-authored-by: Dong Yang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: dongy <[email protected]>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
17 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Fixes # .
Description
A few sentences describing the changes proposed in this pull request.
Status
Ready/Work in progress/Hold
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests.make htmlcommand in thedocs/folder.