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* update openmp flag Signed-off-by: Wenqi Li <[email protected]> * improves boundtype docs Signed-off-by: Wenqi Li <[email protected]> * update setup.py Signed-off-by: Wenqi Li <[email protected]> * input validation 1d Signed-off-by: Wenqi Li <[email protected]> * fixes typos Signed-off-by: Wenqi Li <[email protected]> * fixes typos Signed-off-by: Wenqi Li <[email protected]> * merge upstream changes Signed-off-by: Wenqi Li <[email protected]> * tests enums Signed-off-by: Wenqi Li <[email protected]> * init. test grid pull Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * test grid_pull Signed-off-by: Wenqi Li <[email protected]> * fixes min test Signed-off-by: Wenqi Li <[email protected]> * adds device tests Signed-off-by: Wenqi Li <[email protected]> * bwd tests Signed-off-by: Wenqi Li <[email protected]>
move transforms out of compose file. this is backwards compatible.
* pad_collation Signed-off-by: Richard Brown <[email protected]> * increase number of test cases to ensure required testing errors Signed-off-by: Richard Brown <[email protected]> * determinism in setUp Signed-off-by: Richard Brown <[email protected]> * pad collate for list of lists Signed-off-by: Richard Brown <[email protected]> * code format Signed-off-by: Richard Brown <[email protected]> * allow padding options Signed-off-by: Richard Brown <[email protected]>
decollate batch
enhance random range parameters If element `i` is iterable, then `uniform[-rotate_range[i][0], rotate_range[i][1])` will be used to generate the rotation parameter for the ith dimension. If not, `uniform[-rotate_range[i], rotate_range[i])` will be used. This can be altered on a per-dimension basis. E.g., `((0,3), 1, ...)`: for dim0, rotation will be in range `[0, 3]`, and for dim1 `[-1, 1]` will be used. Setting a single value will use `[-x, x]` for dim0 and nothing for the remaining dimensions. Backwards compatibility is ensured because the old behaviour used to do `uniform[-rotate_range[i], rotate_range[i])`, and this PR just adds the possibility to do `uniform[-rotate_range[i][0], rotate_range[i][1])`.
* Fixing issues preventing loss functions from being compatible with Torchscript Signed-off-by: Eric Kerfoot <[email protected]> * Updates Signed-off-by: Eric Kerfoot <[email protected]> * Updates Signed-off-by: Eric Kerfoot <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * Updates Signed-off-by: Eric Kerfoot <[email protected]> * Adding conditional skip to Torchscript tests Signed-off-by: Eric Kerfoot <[email protected]> Co-authored-by: monai-bot <[email protected]>
* [DLMED] fix length > 1024 issue in string list all gather Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more test Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Yiheng Wang <[email protected]>
* DeleteChannel array, dictionary, tests Signed-off-by: Leo Tam <[email protected]> * formatting Signed-off-by: Leo Tam <[email protected]> * DeleteChannel array, dictionary, tests Signed-off-by: Leo Tam <[email protected]> * Register in transform init Signed-off-by: Leo Tam <[email protected]> * clean comment Signed-off-by: Leo Tam <[email protected]> * Dict init Signed-off-by: Leo Tam <[email protected]> * Register D and Dict Signed-off-by: Leo Tam <[email protected]> * Style fix Signed-off-by: Leo Tam <[email protected]> * Safety cast Signed-off-by: Leo Tam <[email protected]> * Changinging names from DeleteChannel to RemoveRepeatedChannel Signed-off-by: Leo Tam <[email protected]> * Lint fixes Signed-off-by: Leo Tam <[email protected]> * Test import fix, autofix again Signed-off-by: Leo Tam <[email protected]>
Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Eric Kerfoot <[email protected]>
* update distcall Signed-off-by: Wenqi Li <[email protected]> * update final closing Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Eric Kerfoot <[email protected]>
* Add ToPIL transformation Signed-off-by: Behrooz <[email protected]> * Add ToPILd, ToPILD, ToPILDict Signed-off-by: Behrooz <[email protected]> * Remove has_pil Signed-off-by: Behrooz <[email protected]> * Include ToPIL, ToPILd, ToPILD, and ToPILDict Also include ToNumpyD, ToNumpyDict, TorchVisionD, and TorchVisionDict Signed-off-by: Behrooz <[email protected]> * Fix a typing issue Signed-off-by: Behrooz <[email protected]> * Fix PIL optional import Signed-off-by: Behrooz <[email protected]> * Add unittests for ToPIL and ToPILD Signed-off-by: Behrooz <[email protected]> * Fix formatting Signed-off-by: Behrooz <[email protected]> * Fix formatting Signed-off-by: Behrooz <[email protected]> * Add PILImage.Image as the input for ToNumpy and ToTensor Signed-off-by: Behrooz <[email protected]> * Fix type checking issue for PIL.Image.Image Signed-off-by: Behrooz <[email protected]> * Change PILImage_fromarray to lower case Signed-off-by: Behrooz <[email protected]>
add RandomizableTransform
* Add more tests to test_deepgrow_dataset Signed-off-by: YuanTingHsieh <[email protected]>
* Add inference transforms Signed-off-by: YuanTingHsieh <[email protected]> * Remove unused import Signed-off-by: YuanTingHsieh <[email protected]> * Fix review comments Signed-off-by: YuanTingHsieh <[email protected]> Co-authored-by: SACHIDANAND ALLE <[email protected]>
* [DLMED] add RandAxisFlip transforms Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix flake8 issues Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>
fix big endianness problem for dictionary reading. Also allow dictionary image_only
* [DLMED] add AutoAdjustChannel transform Signed-off-by: Nic Ma <[email protected]> * [DLMED] add dict version transform Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix doc-build issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to Wenqi's comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update doc-strings Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
Allow missing keys
Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* Update load pretrain for densenet Signed-off-by: Yiheng Wang <[email protected]> * Fix isort issue Signed-off-by: Yiheng Wang <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
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Fixes # .
Description
A few sentences describing the changes proposed in this pull request.
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./runtests.sh --codeformat --coverage../runtests.sh --quick.make htmlcommand in thedocs/folder.