Merged
Conversation
* update workflow Signed-off-by: Wenqi Li <[email protected]> * fixes gpu tests Signed-off-by: Wenqi Li <[email protected]>
* correct panelled example images Signed-off-by: Richard Brown <[email protected]>
* 2755 Add b-spline kernel option Signed-off-by: kate-sann5100 <[email protected]>
* adds integration tests Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * cache pip Signed-off-by: Wenqi Li <[email protected]> * fixes conc Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit 5a931c6. Signed-off-by: Wenqi Li <[email protected]> * print outcome Signed-off-by: Wenqi Li <[email protected]> * fixes typo Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* fixes RandGaussianSmooth Signed-off-by: Wenqi Li <[email protected]> * minor fixes Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* relax atol for a100 Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * fixes #3071 Signed-off-by: Wenqi Li <[email protected]> * remove temp tests Signed-off-by: Wenqi Li <[email protected]> * fixes tests Signed-off-by: Wenqi Li <[email protected]> * update tests Signed-off-by: Wenqi Li <[email protected]> * add tf32 tests Signed-off-by: Wenqi Li <[email protected]> * fixes rtol wit tf32 Signed-off-by: Wenqi Li <[email protected]> * detect tf32 Signed-off-by: Wenqi Li <[email protected]> * update flag Signed-off-by: Wenqi Li <[email protected]> * fixes testing util Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Yiheng Wang <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] enhance random computation Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
…3079) * Torch `CropForeground`, `HistogramNormalize`, `RandHistogramShift` Signed-off-by: Richard Brown <[email protected]> * fix Signed-off-by: Richard Brown <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* [DLMED] add MLFlowHandler Signed-off-by: Nic Ma <[email protected]> * [DLMED] add optional import Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix doc format Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI test Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
…rop` (#3078) Torch `AddCoordinateChannels`, `ExtremePointsChannel`, `RandWeightedCrop`
* [DLMED] fix wrong doc Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
* fixes 33097 Signed-off-by: Wenqi Li <[email protected]> * fixes typo Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] update intensity transforms Signed-off-by: Nic Ma <[email protected]>
* [DLMED] update all the other transforms Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CPU test Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* adds new tests Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * fixes the tests Signed-off-by: Wenqi Li <[email protected]> * split yml Signed-off-by: Wenqi Li <[email protected]> * fixes typo Signed-off-by: Wenqi Li <[email protected]>
* feat: refactor seg-net for easier use Signed-off-by: BenTenmann <[email protected]>
* ignores E402 Module level import not at top of file Signed-off-by: Wenqi Li <[email protected]> * exlcude Signed-off-by: Wenqi Li <[email protected]> * ignore Signed-off-by: Wenqi Li <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Eric Kerfoot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] add state attr Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix integration test Signed-off-by: Nic Ma <[email protected]>
* [DLMED] add integration test Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more random test Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
…gLabel (#3129) Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* 0-d array Signed-off-by: Wenqi Li <[email protected]> * handling string types Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add kwargs for torch APIs Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] update GridPatchDataset Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix test typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] update for windows Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix windows test Signed-off-by: Nic Ma <[email protected]> * [DLMED] update test Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* update get_rank calls Signed-off-by: Wenqi Li <[email protected]> * relaxing atol/rtol in tests.test_savitzky_golay_filter Signed-off-by: Wenqi Li <[email protected]> * skip timing for cpu only tests Signed-off-by: Wenqi Li <[email protected]> * fixes import ContentTooShortError Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* avoid re-creation of AddChannel in EnsureChannelFirst
…dComponents (#3647) * [DLMED] support single channel One-Hot Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add missing doc-string Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance correct centers Signed-off-by: Nic Ma <[email protected]>
* option to occlude all channels simultaneously
* removed duplicated Signed-off-by: Wenqi Li <[email protected]> * update gitignore to ignore readthedocs autobuild Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* ignore some flake8 errors Signed-off-by: Wenqi Li <[email protected]> * fixes #3660 2003->2106 Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add default values Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
install fresh from conda or install dependencies using environment-dev.yml Signed-off-by: Richard Brown <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* DictPostFixes Signed-off-by: Richard Brown <[email protected]> * use fn Signed-off-by: Richard Brown <[email protected]> * fix Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* update folder layout Signed-off-by: Wenqi Li <[email protected]> * revise create_file_basename util Signed-off-by: Wenqi Li <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update based on comments Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* [DLMED] change to warning Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more error message Signed-off-by: Nic Ma <[email protected]> * [DLMED] simplify the messages Signed-off-by: Nic Ma <[email protected]>
* [DLMED] fix channel_dim issue in ITKReader, add it in NibabelReader Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] restore LoadImaged test Signed-off-by: Nic Ma <[email protected]>
allow test image creation to save to different folders and with different file names
* support stack of images with channels Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
17 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Fixes # .
Description
A few sentences describing the changes proposed in this pull request.
Status
Ready/Work in progress/Hold
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests.make htmlcommand in thedocs/folder.