merge master#30
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Nic-Ma merged 19 commits intoNic-Ma:1578-resume-checkpointsaverfrom Feb 22, 2021
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* numpy dtype alias Signed-off-by: Wenqi Li <[email protected]> * is_tensor => isinstance Signed-off-by: Wenqi Li <[email protected]> * type of dtype Signed-off-by: Wenqi Li <[email protected]> * relaxes some typing constraints Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * update based on the comments Signed-off-by: Wenqi Li <[email protected]> * fixes docstring typos Signed-off-by: Wenqi Li <[email protected]>
* rand_gaussian_noised with multiple keys Signed-off-by: Richard Brown <[email protected]> * update key names Signed-off-by: Richard Brown <[email protected]> * clear list of noise before randomising Signed-off-by: Richard Brown <[email protected]> * add type Signed-off-by: Richard Brown <[email protected]> * bug fix Signed-off-by: Richard Brown <[email protected]> * use ensure_tuple_rep Signed-off-by: Richard Brown <[email protected]>
* [DLMED] fix TorchScript issue in AHNet Signed-off-by: Nic Ma <[email protected]> * [DLMED] add test cases Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix torchscript issue in PyTorch 1.5 Signed-off-by: Nic Ma <[email protected]>
* [DLMED] fix distirbuted data parallel issue in ClassificationSaver Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix min test Signed-off-by: Nic Ma <[email protected]> * [DLMED] add @SkipIfBeforePyTorchVersion((1, 7)) Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
* [DLMED] update SmartCacheDataset docs and warning Signed-off-by: Nic Ma <[email protected]> * isAlive => is_alive Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] fix evenly divisible issue in AUC metric Signed-off-by: Nic Ma <[email protected]>
* [DLMED] add RandLambdad transform Signed-off-by: Nic Ma <[email protected]> * [DLMED] add doc-strings Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] change to rtol=1e-05 Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * fixes seeds Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] fix typo in the doc-string of SegResNet Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to Yiheng's comments Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] fix classification saver issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance distributed tests Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
* [DLMED] Enhance doc-string of transforms Signed-off-by: Nic Ma <[email protected]> * [DLMED] optimize the numpy computation Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
* [DLMED] add base class for TensorBoard handlers Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] enhance integration test with TensorBoard writer Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] add close method Signed-off-by: Nic Ma <[email protected]> * [DLMED] Enhance MetricsSaver doc-strings Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>
* 1559 add DVF2DDF Signed-off-by: kate-sann5100 <[email protected]> * 1559 add gradient test Signed-off-by: kate-sann5100 <[email protected]> * update docs; test cases Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
Signed-off-by: Yiheng Wang <[email protected]>
* Add deepgrow dataset Signed-off-by: YuanTingHsieh <[email protected]> * Fix CI/CD issue Signed-off-by: YuanTingHsieh <[email protected]> * Fix issues based on review Signed-off-by: YuanTingHsieh <[email protected]>
* [DLMED] change tests to use self random state Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix CI tests Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>
This reverts commit 181f633. Signed-off-by: Wenqi Li <[email protected]>
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Fixes # .
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./runtests.sh --codeformat --coverage../runtests.sh --quick.make htmlcommand in thedocs/folder.