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* ndim -> spatial_dims Signed-off-by: Wenqi Li <[email protected]> * dimensions -> spatial_dims Signed-off-by: Wenqi Li <[email protected]> * deprecated arg with auto replacement Signed-off-by: Wenqi Li
* [DLMED] merge LocalPatchShuffle Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance doc-string Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
Torch RandRotate
* Add cupy to tensor Signed-off-by: Behrooz <[email protected]> * Add unittest for cupy>tensor Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] enhance the pad mode Signed-off-by: Nic Ma <[email protected]> * [DLMED] update all the tensor pad related Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix error tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix GPU tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* con1_padding -> conv1_padding Signed-off-by: Wenqi Li <[email protected]> * simpler init. Signed-off-by: Wenqi Li <[email protected]> * fixes 2715 Signed-off-by: Wenqi Li <[email protected]> * adds 3d tests Signed-off-by: Wenqi Li <[email protected]> * fixes flake8 error Signed-off-by: Wenqi Li <[email protected]>
* ThresholdIntensity, ThresholdIntensityd Signed-off-by: Richard Brown <[email protected]>
* Add dropout arg in DynUNet init Signed-off-by: Andres <[email protected]>
* [DLMED] add device option Signed-off-by: Nic Ma <[email protected]> * look up options for types Signed-off-by: Wenqi Li <[email protected]> * adds unit tests Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
…iles, ScaleIntensityRangePercentilesd (#2943) ScaleIntensityRange, ScaleIntensityRanged, ScaleIntensityRangePercentiles, ScaleIntensityRangePercentilesd
Rotate, Rotated, RandRotate, RandRotated
…ndAffined, Rand2dElastic, Rand3dElastic, Rand2dElasticd, Rand3dElasticd (#2922) * AffineGrid, RandAffineGrid, Resample Signed-off-by: Richard Brown <[email protected]> * Affine, RandAffine, Affined, RandAffined Signed-off-by: Richard Brown <[email protected]> * deprecate as_tensor_output Signed-off-by: Richard Brown <[email protected]> * fixes Signed-off-by: Richard Brown <[email protected]> * remove plotting Signed-off-by: Richard Brown <[email protected]> * Rand2dElastic, Rand3dElastic, Rand2dElasticd, Rand3dElasticd Signed-off-by: Richard Brown <[email protected]> * CropForeground Signed-off-by: Richard Brown <[email protected]> * fix Invertd Signed-off-by: Richard Brown <[email protected]>
* transforms convert to the necessary type Signed-off-by: Richard Brown <[email protected]>
* Add dtype to ToCuPy Signed-off-by: Behrooz <[email protected]> * Add unittests to include dtype Signed-off-by: Behrooz <[email protected]> * Implement convert_to_cupy Signed-off-by: Behrooz <[email protected]> * Addressed all comments Signed-off-by: Behrooz <[email protected]> * Addressed all comments Signed-off-by: Behrooz <[email protected]> * Add dtype for Sequence Signed-off-by: Behrooz <[email protected]>
* [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] remove unnecessary arg Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix style issue Signed-off-by: Nic Ma <[email protected]>
* [DLMED] enhance type conversion Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI test Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more unit tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]>
* fixes tutorial 353 Signed-off-by: Wenqi Li <[email protected]> * adding type tests Signed-off-by: Wenqi Li <[email protected]> * improves type checks Signed-off-by: Wenqi Li <[email protected]> * fixes flake8 Signed-off-by: Wenqi Li <[email protected]> * fixes as channel first Signed-off-by: Wenqi Li <[email protected]> * type test option Signed-off-by: Wenqi Li <[email protected]> * ndarray suuport Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> update Signed-off-by: Wenqi Li <[email protected]> * bash option for windows test Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * enhance norm intensity tests Signed-off-by: Wenqi Li <[email protected]> * fixes merge tests Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* add multimodal transformers Signed-off-by: ahatamizadeh <[email protected]>
…op_centers`, `generate_pos_neg_label_crop_centers`, `generate_label_classes_crop_centers` (#2958) torch map_binary_to_indices, map_classes_to_indices, correct_crop_centers, generate_pos_neg_label_crop_centers, generate_label_classes_crop_centers
* Implement CuCIM wrapper transfrom Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
* Update with cupy.ndarray Signed-off-by: Behrooz <[email protected]> * Change to use has_cp Signed-off-by: Behrooz <[email protected]> * Change the format Signed-off-by: Behrooz <[email protected]> * Fix a bug Signed-off-by: Behrooz <[email protected]>
* Fix for Jupyter plotting Signed-off-by: Eric Kerfoot <[email protected]> * Fix for Jupyter plotting Signed-off-by: Eric Kerfoot <[email protected]> * Fix for Jupyter plotting Signed-off-by: Eric Kerfoot <[email protected]>
* enhance affinegrid to use torch backend Signed-off-by: Wenqi Li <[email protected]> * style fixes Signed-off-by: Wenqi Li <[email protected]> * codeformat fixes Signed-off-by: Wenqi Li <[email protected]> * backend affien grid Signed-off-by: Wenqi Li <[email protected]> * device support Signed-off-by: Wenqi Li <[email protected]> * less lookup Signed-off-by: Wenqi Li <[email protected]> * create grid with torch backend Signed-off-by: Wenqi Li <[email protected]> * fixes tests Signed-off-by: Wenqi Li <[email protected]> * default to torch create grid Signed-off-by: Wenqi Li <[email protected]> * fixes unit test Signed-off-by: Wenqi Li <[email protected]> * randaffine with create grid Signed-off-by: Wenqi Li <[email protected]> * create_grid backend change for spatial transforms Signed-off-by: Wenqi Li <[email protected]> * create control grid tensor Signed-off-by: Wenqi Li <[email protected]> * enhance spatial, and crop xforms - Update test_rand_deform_grid.py - center_scale_crop - center_spatial_crop - rand_scale_crop - rand_spatial_crop - rand_spatial_crop_samples Signed-off-by: Wenqi Li <[email protected]> * fixes invert Signed-off-by: Wenqi Li <[email protected]> * tensor resize, unit test fixes Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Behrooz <[email protected]>
* update multimodal doc and model names (Transchex) Signed-off-by: ahatamizadeh <[email protected]>
* remove deprecated Signed-off-by: Wenqi Li <[email protected]> * min-test list Signed-off-by: Wenqi Li <[email protected]> * preserves tests from tests/test_handler_transform_inverter.py Signed-off-by: Wenqi Li <[email protected]>
* enhance nightly test Signed-off-by: Wenqi Li <[email protected]> * print after the test for information Signed-off-by: Wenqi Li <[email protected]>
* dimension check for pretrained model weights This PR implements a dimension check, before trying to load pre-trained model weights. Signed-off-by: neuronflow <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Signed-off-by: neuronflow <[email protected]> * multi line split error Signed-off-by: neuronflow <[email protected]> Co-authored-by: monai-bot <[email protected]>
…tatement (#2996) * Refactor unnecessary `else` / `elif` when `if` block has a `return` statement * Remove unnecessary lambda expression (#2997) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * type fixes Signed-off-by: Wenqi Li <[email protected]> * remove repeated init Signed-off-by: Wenqi Li <[email protected]> * fixes import, unused vars Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] add copy option Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance test Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
* test 1.9.1 Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit 1f27a63. Signed-off-by: Wenqi Li <[email protected]>
* fixes cucim compatibility Signed-off-by: Wenqi Li <[email protected]> * simplified import Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* [DLMED] update highlights Signed-off-by: Nic Ma <[email protected]>
* release note v0.7 Signed-off-by: Wenqi Li <[email protected]> * adds whatsnew 07 Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] update README Signed-off-by: Nic Ma <[email protected]> * [DLMED] update what's new Signed-off-by: Nic Ma <[email protected]> * [DLMED] use whatsnew link Signed-off-by: Nic Ma <[email protected]>
* [DLMED] add more doc Signed-off-by: Nic Ma <[email protected]> * [DLMED] edit change log Signed-off-by: Nic Ma <[email protected]> * [DLMED] add command to get transform backend Signed-off-by: Nic Ma <[email protected]> * [DLMED] enhance the doc Signed-off-by: Nic Ma <[email protected]>
…dGaussianSharpen` (#2971) Torch `GaussianSmooth`, `RandGaussianSmooth`, `GaussianSharpen`, `RandGaussianSharpen`
* apply pyupgrade Signed-off-by: Jirka <[email protected]> * exclude monai/_version.py Signed-off-by: Jirka <[email protected]>
* enhance the release version string check Signed-off-by: GitHub <[email protected]> * update the releasing steps Signed-off-by: GitHub <[email protected]> Co-authored-by: Nic Ma <[email protected]>
* [DLMED] update ignite 0.4.6 Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issues Signed-off-by: Nic Ma <[email protected]>
* print dtype along with type Signed-off-by: Wenqi Li <[email protected]> * update tests Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
…SpikeNoise (#2974) GibbsNoise, RandGibbsNoise, KSpaceSpikeNoise, RandKSpaceSpikeNoise
…std (#3044) Signed-off-by: Richard Brown <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* torch fgbgtoindices Signed-off-by: Wenqi Li <[email protected]> * unravel indices Signed-off-by: Wenqi Li <[email protected]> * simplified Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Nic Ma <[email protected]>
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Fixes # .
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A few sentences describing the changes proposed in this pull request.
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./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests.make htmlcommand in thedocs/folder.