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merge master#222

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Nic-Ma merged 23 commits intoNic-Ma:2959-fix-float64-issuefrom
Project-MONAI:dev
Sep 16, 2021
Merged

merge master#222
Nic-Ma merged 23 commits intoNic-Ma:2959-fix-float64-issuefrom
Project-MONAI:dev

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@Nic-Ma Nic-Ma commented Sep 16, 2021

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

wyli and others added 23 commits September 8, 2021 12:38
* ndim -> spatial_dims

Signed-off-by: Wenqi Li <[email protected]>

* dimensions -> spatial_dims

Signed-off-by: Wenqi Li <[email protected]>

* deprecated arg with auto replacement

Signed-off-by: Wenqi Li
* [DLMED] merge LocalPatchShuffle

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] enhance doc-string

Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
Torch RandRotate
* Add cupy to tensor

Signed-off-by: Behrooz <[email protected]>

* Add unittest for cupy>tensor

Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Nic Ma <[email protected]>

Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] enhance the pad mode

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] update all the tensor pad related

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix error tests

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix GPU tests

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* con1_padding -> conv1_padding

Signed-off-by: Wenqi Li <[email protected]>

* simpler init.

Signed-off-by: Wenqi Li <[email protected]>

* fixes 2715

Signed-off-by: Wenqi Li <[email protected]>

* adds 3d tests

Signed-off-by: Wenqi Li <[email protected]>

* fixes flake8 error

Signed-off-by: Wenqi Li <[email protected]>
* ThresholdIntensity, ThresholdIntensityd

Signed-off-by: Richard Brown <[email protected]>
* Add dropout arg in DynUNet init

Signed-off-by: Andres <[email protected]>
* [DLMED] add device option

Signed-off-by: Nic Ma <[email protected]>

* look up options for types

Signed-off-by: Wenqi Li <[email protected]>

* adds unit tests

Signed-off-by: Wenqi Li <[email protected]>

Co-authored-by: Wenqi Li <[email protected]>
…iles, ScaleIntensityRangePercentilesd (#2943)

ScaleIntensityRange, ScaleIntensityRanged, ScaleIntensityRangePercentiles, ScaleIntensityRangePercentilesd
Rotate, Rotated, RandRotate, RandRotated
…ndAffined, Rand2dElastic, Rand3dElastic, Rand2dElasticd, Rand3dElasticd (#2922)

* AffineGrid, RandAffineGrid, Resample

Signed-off-by: Richard Brown <[email protected]>

* Affine, RandAffine, Affined, RandAffined

Signed-off-by: Richard Brown <[email protected]>

* deprecate as_tensor_output

Signed-off-by: Richard Brown <[email protected]>

* fixes

Signed-off-by: Richard Brown <[email protected]>

* remove plotting

Signed-off-by: Richard Brown <[email protected]>

* Rand2dElastic, Rand3dElastic, Rand2dElasticd, Rand3dElasticd

Signed-off-by: Richard Brown <[email protected]>

* CropForeground

Signed-off-by: Richard Brown <[email protected]>

* fix Invertd

Signed-off-by: Richard Brown <[email protected]>
* transforms convert to the necessary type

Signed-off-by: Richard Brown <[email protected]>
* Add dtype to ToCuPy

Signed-off-by: Behrooz <[email protected]>

* Add unittests to include dtype

Signed-off-by: Behrooz <[email protected]>

* Implement convert_to_cupy

Signed-off-by: Behrooz <[email protected]>

* Addressed all comments

Signed-off-by: Behrooz <[email protected]>

* Addressed all comments

Signed-off-by: Behrooz <[email protected]>

* Add dtype for Sequence

Signed-off-by: Behrooz <[email protected]>
* [DLMED] update according to comments

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] remove unnecessary arg

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix style issue

Signed-off-by: Nic Ma <[email protected]>
* [DLMED] enhance type conversion

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix CI test

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add more unit tests

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix flake8

Signed-off-by: Nic Ma <[email protected]>
* fixes tutorial 353

Signed-off-by: Wenqi Li <[email protected]>

* adding type tests

Signed-off-by: Wenqi Li <[email protected]>

* improves type checks

Signed-off-by: Wenqi Li <[email protected]>

* fixes flake8

Signed-off-by: Wenqi Li <[email protected]>

* fixes as channel first

Signed-off-by: Wenqi Li <[email protected]>

* type test option

Signed-off-by: Wenqi Li <[email protected]>

* ndarray suuport

Signed-off-by: Wenqi Li <[email protected]>

* fixes unit tests

Signed-off-by: Wenqi Li <[email protected]>

 update

Signed-off-by: Wenqi Li <[email protected]>

* bash option for windows test

Signed-off-by: Wenqi Li <[email protected]>

* fixes unit tests

Signed-off-by: Wenqi Li <[email protected]>

* enhance norm intensity tests

Signed-off-by: Wenqi Li <[email protected]>

* fixes merge tests

Signed-off-by: Wenqi Li <[email protected]>
@Nic-Ma Nic-Ma merged commit 5acacc6 into Nic-Ma:2959-fix-float64-issue Sep 16, 2021
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5 participants