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* skip RandAffine if possible Signed-off-by: Richard Brown <[email protected]> * add randaffined Signed-off-by: Richard Brown <[email protected]> * mypy fix Signed-off-by: Richard Brown <[email protected]> * check consistency Signed-off-by: Richard Brown <[email protected]>
* [DLMED] use shutil.move instead Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
fix cachedataset w persistent workers problem by deep copying first non-deterministic transform
fix set visible devices
* better way of managing Cache Signed-off-by: Coen <[email protected]> * Update test_smartcachedataset.py Signed-off-by: Coen <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Yiheng Wang <[email protected]>
Signed-off-by: chaliebudd <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* cache grid Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * adds cache tests Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: ambroslins <[email protected]>
* add pypi quick tests Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * cron pypi tests Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit b6d86d6. Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * revise cron Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit 44cddc0. Signed-off-by: Wenqi Li <[email protected]> * docstring Signed-off-by: Wenqi Li <[email protected]> * update setup.cfg Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
* [DLMED] fix CopyItemsd transform Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
* enhance downloading APIs Signed-off-by: Wenqi Li <[email protected]> * update docstrings Signed-off-by: Wenqi Li <[email protected]>
* removing convolutional compatability kernel for an optional matric multiplication Signed-off-by: chaliebudd <[email protected]> * change to identity test against None Co-authored-by: Richard Brown <[email protected]> Signed-off-by: chaliebudd <[email protected]> * updating tests, non-determanism should be solved Signed-off-by: chaliebudd <[email protected]> * moving compatability matrix to gpu in test to prevent errors when running without cuda Signed-off-by: chaliebudd <[email protected]> * removing unused imports Signed-off-by: chaliebudd <[email protected]> * pytyping fix for optional arg Signed-off-by: chaliebudd <[email protected]> Co-authored-by: Richard Brown <[email protected]>
* removing convolutional compatability kernel for an optional matric multiplication Signed-off-by: chaliebudd <[email protected]> * change to identity test against None Co-authored-by: Richard Brown <[email protected]> Signed-off-by: chaliebudd <[email protected]> * updating tests, non-determanism should be solved Signed-off-by: chaliebudd <[email protected]> * moving compatability matrix to gpu in test to prevent errors when running without cuda Signed-off-by: chaliebudd <[email protected]> * removing unused imports Signed-off-by: chaliebudd <[email protected]> * pytyping fix for optional arg Signed-off-by: chaliebudd <[email protected]> * moving back to permissive testing sue to cuda non determanism Signed-off-by: chaliebudd <[email protected]> Co-authored-by: Richard Brown <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* skip resampling if possible Signed-off-by: Wenqi Li <[email protected]> * update docstring Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] enhance doc-string of CacheDataset Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
* revise cron-pip Signed-off-by: Wenqi Li <[email protected]> * fixes pythonpath Signed-off-by: Wenqi Li <[email protected]> * update path Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
* skip resampling if possible Signed-off-by: Wenqi Li <[email protected]> * update docstring Signed-off-by: Wenqi Li <[email protected]>
* Started on a ResNet for classification from 1D, 2D, 3D images Signed-off-by: Douwe Spaanderman <[email protected]>
* release note v0.5.3 Signed-off-by: Wenqi Li <[email protected]> * update changelog Signed-off-by: Wenqi Li <[email protected]>
* [DLMED] add more type to decollate Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix pickle issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>
torch transforms - RandRicianNoise, StdShiftIntensity, RandStdShiftIntensity
Signed-off-by: Richard Brown <[email protected]>
* all close Signed-off-by: Richard Brown <[email protected]> * assert_allclose Signed-off-by: Richard Brown <[email protected]> * NormalizeIntensity Signed-off-by: Richard Brown <[email protected]>
* Change default methods for nn.Module Signed-off-by: Behrooz <[email protected]> * Remove DataLoader Signed-off-by: Behrooz <[email protected]>
* all close Signed-off-by: Richard Brown <[email protected]> * assert_allclose Signed-off-by: Richard Brown <[email protected]> * ScaleIntensity Signed-off-by: Richard Brown <[email protected]>
* backends -> backend Signed-off-by: Richard Brown <[email protected]> * code format Signed-off-by: Richard Brown <[email protected]> * code format2 Signed-off-by: Richard Brown <[email protected]>
* [DLMED] support random fill Signed-off-by: Nic Ma <[email protected]> * [DLMED] update for test Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] update dict transform Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix mypy Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] support auto computing min and max Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
backends -> backend
* enhance swish Signed-off-by: Yiheng Wang <[email protected]> * add inplace to swish Signed-off-by: Yiheng Wang <[email protected]> * add efn features Signed-off-by: Yiheng Wang <[email protected]> * add more pretrained weights url Signed-off-by: Yiheng Wang <[email protected]> * fix flake8 errors Signed-off-by: Yiheng Wang <[email protected]> * use look up option Signed-off-by: Yiheng Wang <[email protected]> * fix deepsource issues Signed-off-by: Yiheng Wang <[email protected]> * fix type issues Signed-off-by: Yiheng Wang <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* resume github premerge tests Signed-off-by: Wenqi Li <[email protected]> * fixes #2821 Signed-off-by: Wenqi Li <[email protected]> * update group names Signed-off-by: Wenqi Li <[email protected]>
* add pre-commit Signed-off-by: Jirka <[email protected]>
* Local Patch Shuffle Transform Initial Version Added Signed-off-by: vnath <[email protected]>
Signed-off-by: Jirka <[email protected]>
* [DLMED] add support to fill outside Signed-off-by: Nic Ma <[email protected]> * [DLMED] add paper link for cutout Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
* Add deepedit transforms Signed-off-by: Andres <[email protected]> * Run unittests - autofix Signed-off-by: Andres <[email protected]> * Update transform Signed-off-by: Andres <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Wenqi Li <[email protected]>
…ty, RepeatChannel (#2840)
…il, ToTensor, Transpose (#2850) * backends -> backend Signed-off-by: Richard Brown <[email protected]> * code format Signed-off-by: Richard Brown <[email protected]> * code format2 Signed-off-by: Richard Brown <[email protected]> * AddChannel, AsChannelFirst, AsChannelLast, EnsureChannelFirst, Identity, RepeatChannel Signed-off-by: Richard Brown <[email protected]> * moveaxis backwards compatible Signed-off-by: Richard Brown <[email protected]> * code format Signed-off-by: Richard Brown <[email protected]> * EnsureType, RemoveRepeatedChannel, SplitChannel, ToCupy, ToNumpy, ToPil, ToTensor, Transpose Signed-off-by: Richard Brown <[email protected]> * trigger ci/cd Signed-off-by: Richard Brown <[email protected]> * permute requires positive indices Signed-off-by: Richard Brown <[email protected]> * correct permute Signed-off-by: Richard Brown <[email protected]> * correct permute Signed-off-by: Richard Brown <[email protected]> * has_pil Signed-off-by: Richard Brown <[email protected]>
* add classification support for ViT Model Signed-off-by: ahatamizadeh <[email protected]> * add classification support for ViT Model Signed-off-by: ahatamizadeh <[email protected]> * add classification support for ViT Model Signed-off-by: ahatamizadeh <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>
* [DLMED] add args to ThreadDataLoader Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]>
…_at_least (#2859) * DataStats, LabelToMask, Lambda, RandLambda, SqueezeDim, is_module_ver_at_least Signed-off-by: Richard Brown <[email protected]>
* update cron tests Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * update gpu info Signed-off-by: Wenqi Li <[email protected]> * tmp tests Signed-off-by: Wenqi Li <[email protected]> * temp test Signed-off-by: Wenqi Li <[email protected]> * Revert "temp test" This reverts commit 3a5b8f8. Signed-off-by: Wenqi Li <[email protected]> * Revert "tmp tests" This reverts commit e960dac. Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit 911c332. Signed-off-by: Wenqi Li <[email protected]>
* fixes #2639 Signed-off-by: Wenqi Li <[email protected]> * fixes typo Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Nic Ma <[email protected]>
* split CI package Signed-off-by: Jirka <[email protected]> * tmpdir Signed-off-by: Jirka <[email protected]> * tmpdir Signed-off-by: Jirka <[email protected]>
* Implement SplitOnGrid Signed-off-by: Behrooz <[email protected]> * Implement dictionary-based SplitOnGrid Signed-off-by: Behrooz <[email protected]> * Update inits Signed-off-by: Behrooz <[email protected]> * Update docs Signed-off-by: Behrooz <[email protected]> * Change imports Signed-off-by: Behrooz <[email protected]> * Update input logic in SplitOnGrid) Signed-off-by: Behrooz <[email protected]> * Add unittests for SplitOnGrid and SplitOnGridDict Signed-off-by: Behrooz <[email protected]> * Sort import Signed-off-by: Behrooz <[email protected]> * Remove imports Signed-off-by: Behrooz <[email protected]> * Address comments Signed-off-by: Behrooz <[email protected]> * Remove optional Signed-off-by: Behrooz <[email protected]> * Address thread safety issues Signed-off-by: Behrooz <[email protected]>
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Fixes # .
Description
A few sentences describing the changes proposed in this pull request.
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Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests.make htmlcommand in thedocs/folder.