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merge master#21

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Nic-Ma merged 19 commits intoNic-Ma:1478-fix-torchscript-ahnetfrom
Project-MONAI:master
Feb 2, 2021
Merged

merge master#21
Nic-Ma merged 19 commits intoNic-Ma:1478-fix-torchscript-ahnetfrom
Project-MONAI:master

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@Nic-Ma Nic-Ma commented Feb 2, 2021

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh --codeformat --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

Nic-Ma and others added 19 commits January 21, 2021 14:11
* [DLMED] fix TorchScript issue in AHNet

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add test cases

Signed-off-by: Nic Ma <[email protected]>
* Fix for device config script

Signed-off-by: Eric Kerfoot <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

Co-authored-by: monai-bot <[email protected]>
Co-authored-by: Wenqi Li <[email protected]>
* [DLMED] add IterationHandler refer to the EpochHandler in ignite

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] fix flake8 issue

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix the multi-gpu issue

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix typo

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix distributed tests

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix flake8 issue

Signed-off-by: Nic Ma <[email protected]>

Co-authored-by: monai-bot <[email protected]>
Stop build if the tag format is wrong

Signed-off-by: Isaac Yang <[email protected]>
learning rate finder and corresponding test
* test new action for quick test; add temp tests

Signed-off-by: Wenqi Li <[email protected]>

* testing action

Signed-off-by: Wenqi Li <[email protected]>

* remove temp test

Signed-off-by: Wenqi Li <[email protected]>
Signed-off-by: Richard Brown <[email protected]>
* [DLMED] add more Events

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add 3 Events

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] add tests

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

Co-authored-by: monai-bot <[email protected]>
* 1442 use pull-grid only for above linear interpolation

Signed-off-by: kate-sann5100 <[email protected]>
Signed-off-by: Nic Ma <[email protected]>

Co-authored-by: Eric Kerfoot <[email protected]>
…1497)

* [DLMED] add IterationHandler refer to the EpochHandler in ignite

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] fix flake8 issue

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix the multi-gpu issue

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix typo

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix distributed tests

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix flake8 issue

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add engine to metrics

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] share metric details in engine

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add metrics report

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add average value to report

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add summary report

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add docs

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] fix flake8 issue

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] add unit tests and distributed tests

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] fix flake8 issue

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix typo

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] remove from min_tests

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] remove useless var

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add skip flag

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add dist tests

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] fix flake8 issue

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] enhance some unit tests

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] remove from min_tests

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] change to standlone APIs to write files

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] add file type check

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add output_type arg

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] develop standlone API

Signed-off-by: Nic Ma <[email protected]>

* [MONAI] python code formatting

Signed-off-by: monai-bot <[email protected]>

* [DLMED] fix flake8 issue

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix flake8 error

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] fix min test

Signed-off-by: Nic Ma <[email protected]>

Co-authored-by: monai-bot <[email protected]>
* numpy dtype alias

Signed-off-by: Wenqi Li <[email protected]>

* is_tensor => isinstance

Signed-off-by: Wenqi Li <[email protected]>

* type of dtype

Signed-off-by: Wenqi Li <[email protected]>

* relaxes some typing constraints

Signed-off-by: Wenqi Li <[email protected]>

* fixes unit tests

Signed-off-by: Wenqi Li <[email protected]>

* update based on the comments

Signed-off-by: Wenqi Li <[email protected]>

* fixes docstring typos

Signed-off-by: Wenqi Li <[email protected]>
@Nic-Ma Nic-Ma merged commit dcf58c3 into Nic-Ma:1478-fix-torchscript-ahnet Feb 2, 2021
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7 participants