merge master by Nic-Ma · Pull Request #148 · Nic-Ma/MONAI

Nic-Ma · 2021-06-25T03:41:37Z

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

Non-breaking change (fix or new feature that would not break existing functionality).
Breaking change (fix or new feature that would cause existing functionality to change).
New tests added to cover the changes.
Integration tests passed locally by running ./runtests.sh --codeformat --coverage.
Quick tests passed locally by running ./runtests.sh --quick.
In-line docstrings updated.
Documentation updated, tested make html command in the docs/ folder.

Signed-off-by: Wenqi Li <[email protected]>

* [DLMED] add EarlyStop handler Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] enhance validation handler Signed-off-by: Nic Ma <[email protected]> * [DLMED] add set_trainer support Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more check Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>

* [DLMED] change to save patch_index in meta_dict Signed-off-by: Nic Ma <[email protected]> * [DLMED] remove error import Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix CI tests Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>

* Enabled partial checkpoint loading Allowing partial loading of a model via strict=False. Signed-off-by: Petru-Daniel Tudosiu <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] simplify strict arg Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Nic Ma <[email protected]>

* less warning msg; remove PILImage types Signed-off-by: Wenqi Li <[email protected]> * remove engine type Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * add quick py36 37 tests Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit deaed40. Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit 3e8d8f4. Signed-off-by: Wenqi Li <[email protected]> * min test exclude senet test Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * temp test Signed-off-by: Wenqi Li <[email protected]> * Revert "temp test" This reverts commit 31f40a0. Signed-off-by: Wenqi Li <[email protected]> * update get gpu id Signed-off-by: Wenqi Li <[email protected]> * update docsstrings Signed-off-by: Wenqi Li <[email protected]>

* Add ProbNMS to transforts/post/array Signed-off-by: Behrooz <[email protected]> * Implement ProbNMSDict Signed-off-by: Behrooz <[email protected]> * Update the usage and add unittests Signed-off-by: Behrooz <[email protected]> * Update docs Signed-off-by: Behrooz <[email protected]> * Correct docs Signed-off-by: Behrooz <[email protected]> * Correct test case Signed-off-by: Behrooz <[email protected]> Co-authored-by: Wenqi Li <[email protected]>

Signed-off-by: Wenqi Li <[email protected]>

* Implement garbage collector handler Signed-off-by: Behrooz <[email protected]> * Make trigger_event lower case Signed-off-by: Behrooz <[email protected]> * Add unittest for garbage collector Signed-off-by: Behrooz <[email protected]> * Update docs Signed-off-by: Behrooz <[email protected]> * Exclude from min test Signed-off-by: Behrooz <[email protected]> * Fix a typo Signed-off-by: Behrooz <[email protected]> * Fix a bug Signed-off-by: Behrooz <[email protected]>

* [DLMED] add strict_shape option Signed-off-by: Nic Ma <[email protected]> * [DLMED] add unit tests Signed-off-by: Nic Ma <[email protected]> * update test case Signed-off-by: Wenqi Li <[email protected]> * fixes test config Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Wenqi Li <[email protected]>

* [DLMED] enhance decathlon datalist Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] add unit test Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> Co-authored-by: Behrooz <[email protected]>

Signed-off-by: Behrooz <[email protected]>

* adds docker tag action Signed-off-by: Wenqi Li <[email protected]> * adds tag info Signed-off-by: Wenqi Li <[email protected]> * update versioneer Signed-off-by: Wenqi Li <[email protected]>

Signed-off-by: Wenqi Li <[email protected]>

* refactor docker building Signed-off-by: Wenqi Li <[email protected]>

* update docs deps. Signed-off-by: Wenqi Li <[email protected]> * fixes https://github.com/Project-MONAI/MONAI/runs/2283148095\?check_suite_focus\=true\#step:7:8972 Signed-off-by: Wenqi Li <[email protected]> * Revert "fixes https://github.com/Project-MONAI/MONAI/runs/2283148095\?check_suite_focus\=true\#step:7:8972" This reverts commit 1407400. Signed-off-by: Wenqi Li <[email protected]>

* Update garbage collection assertion to a more reliable one Signed-off-by: Behrooz <[email protected]> * Remove print Signed-off-by: Behrooz <[email protected]>

* Working ParameterScheduler Added a new ParameterScheduler handler and the required tests. Signed-off-by: Petru-Daniel Tudosiu <[email protected]>

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add support for addtional events Signed-off-by: Nic Ma <[email protected]> * [DLMED] add unit tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typehints Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * fixes typos Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>

* fixes #1965 Signed-off-by: Wenqi Li <[email protected]> * adds docstring Signed-off-by: Wenqi Li <[email protected]>

* [DLMED] enhance doc-strings Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>

* adding init efficientnet support Signed-off-by: masadcv <[email protected]> * fixing flake8 and further refactoring Signed-off-by: masadcv <[email protected]> * adding unittests for efficiennet Signed-off-by: masadcv <[email protected]> * making unittests backwards compatible python<3.8 Signed-off-by: masadcv <[email protected]> * fixed kitty unittests file path Signed-off-by: masadcv <[email protected]> * adding docstrings and minor refactoring Signed-off-by: masadcv <[email protected]> * fix flake8-py3 failing test Signed-off-by: masadcv <[email protected]> * generalize drop_connect for n-dim, fix/add unittests, remove assert Signed-off-by: masadcv <[email protected]> * fix failing unittest, CC0-license image for test Signed-off-by: masadcv <[email protected]> * refactoring code for review Signed-off-by: masadcv <[email protected]> * WIP fix mypy type hint errors Signed-off-by: masadcv <[email protected]> * fix cuda test error Signed-off-by: masadcv <[email protected]> * WIP fix test errors Signed-off-by: masadcv <[email protected]> * adding non-default shape tests Signed-off-by: masadcv <[email protected]> * remove 3d case from non-default shape test Signed-off-by: masadcv <[email protected]> * refactoring and updating docs Signed-off-by: masadcv <[email protected]> Co-authored-by: Yiheng Wang <[email protected]> Co-authored-by: Wenqi Li <[email protected]>

* [DLMED] add TransformInverter handler Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] add support in SegmentationSaver handler Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI test Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>

* changelog for 0.5.0 Signed-off-by: Wenqi Li <[email protected]> * update changelog Signed-off-by: Wenqi Li <[email protected]>

* [DLMED] add TransformInverter handler Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] add support in SegmentationSaver handler Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI test Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] save mode into inverse dict Signed-off-by: Nic Ma <[email protected]> * [DLMED] add unit tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix ToTensor inverse issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] change the replacement logic into util function Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>

* [DLMED] update highlights for 0.5 Signed-off-by: Nic Ma <[email protected]> * [DLMED] add invert transforms Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more highlights Signed-off-by: Nic Ma <[email protected]> * [DLMED] add checkpointloader Signed-off-by: Nic Ma <[email protected]> * downscale image Signed-off-by: Wenqi Li <[email protected]> * downscale image Signed-off-by: Wenqi Li <[email protected]> * update docs Signed-off-by: Wenqi Li <[email protected]> * update desc Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Wenqi Li <[email protected]>

* temp quick test Signed-off-by: Wenqi Li <[email protected]> * fixes basic unet tests Signed-off-by: Wenqi Li <[email protected]> * upgrade tests Signed-off-by: Wenqi Li <[email protected]> * upgrade cron Signed-off-by: Wenqi Li <[email protected]> * update base Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * update condition Signed-off-by: Wenqi Li <[email protected]> * update cuda Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit 1e448f6. Signed-off-by: Wenqi Li <[email protected]> * Revert "temp quick test" This reverts commit 6563e84. Signed-off-by: Wenqi Li <[email protected]> * temp test Signed-off-by: Wenqi Li <[email protected]> * fixes tests Signed-off-by: Wenqi Li <[email protected]> * temp tests Signed-off-by: Wenqi Li <[email protected]> * update tests Signed-off-by: Wenqi Li <[email protected]> * Revert "temp tests" This reverts commit e246bde. Signed-off-by: Wenqi Li <[email protected]> * Revert "temp test" This reverts commit 794d517. Signed-off-by: Wenqi Li <[email protected]> * update tests Signed-off-by: Wenqi Li <[email protected]>

* adds partial weight util Signed-off-by: Wenqi Li <[email protected]> * update Signed-off-by: Wenqi Li <[email protected]> * update coverage config Signed-off-by: Wenqi Li <[email protected]> * fixes mypy Signed-off-by: Wenqi Li <[email protected]> * unit tests Signed-off-by: Wenqi Li <[email protected]> * tests, examples Signed-off-by: Wenqi Li <[email protected]> * fixes typo Signed-off-by: Wenqi Li <[email protected]> * fixes typos Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * compatible_mod_state -> copy_model_state Signed-off-by: Wenqi Li <[email protected]> * tests/test_set_mod_state.py -> tests/test_copy_model_state.py Signed-off-by: Wenqi Li <[email protected]> * inplace False checkpoint loader Signed-off-by: Wenqi Li <[email protected]>

* [DLMED] add unit tests Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>

…t_transform` (#2384) * [DLMED] enhance all doc-string of handlers Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>

Signed-off-by: Nic Ma <[email protected]>

* refactoring decollate Signed-off-by: Wenqi Li <[email protected]> * fixes unit tests Signed-off-by: Wenqi Li <[email protected]> * more test cases and fixes Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]> * fixes pytype error Signed-off-by: Wenqi Li <[email protected]>

* [DLMED] enhance crop and pad doc-strings Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] add `the` Signed-off-by: Nic Ma <[email protected]> * [DLMED] add examples Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>

Signed-off-by: Wenqi Li <[email protected]>

Signed-off-by: Nic Ma <[email protected]>

* update not nan docstring Signed-off-by: Yiheng Wang <[email protected]> * fix black error Signed-off-by: Yiheng Wang <[email protected]> * Fix indentation errors Signed-off-by: Yiheng Wang <[email protected]>

* initial gmm commit Signed-off-by: charliebudd <[email protected]>

jit Signed-off-by: Wenqi Li <[email protected]>

Signed-off-by: Wenqi Li <[email protected]>

* Add blossom pre-merge pipeline Signed-off-by: Mohammad Adil <[email protected]>

* [DLMED] add min tests command Signed-off-by: Nic Ma <[email protected]> * [DLMED] update CI script Signed-off-by: Nic Ma <[email protected]>

* [DKMED] add CSV datalist Signed-off-by: Nic Ma <[email protected]> * [DLMED] add group feature Signed-off-by: Nic Ma <[email protected]> * [DLMED] add unit test Signed-off-by: Nic Ma <[email protected]> * [DLMED] add more unit tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] add optional install Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]> * [DLMED] add doc-strings Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] add CSVDataset for non-iterable data Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix min test Signed-off-by: Nic Ma <[email protected]> * [DLMED] add CSVIterableDataset base Signed-off-by: Nic Ma <[email protected]> * [DLMED] add CSVIterableDataset Signed-off-by: Nic Ma <[email protected]> * [DLMED] support multiple processes Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix docs-build Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix min tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix CI tests Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] change sys.platform Signed-off-by: Nic Ma <[email protected]> * [DLMED] skip if windows Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> * [DLMED] add col_types arg Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]> Co-authored-by: Eric Kerfoot <[email protected]> Co-authored-by: Wenqi Li <[email protected]>

* [DLMED] test mypy fix Signed-off-by: Nic Ma <[email protected]> * [DLMED] test commit Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix np.random Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix other numpy data type errors Signed-off-by: Nic Ma <[email protected]>

Signed-off-by: Wenqi Li <[email protected]>

* added spikes transform Signed-off-by: Yaniel Cabrera <[email protected]>

* [DLMED] add image_only and unit tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]>

* add json config model support Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>

* [DLMED] add -1 support for pixdim Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix typo Signed-off-by: Nic Ma <[email protected]> * [DLMED] add scale_np = scale_np[:d] Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 Signed-off-by: Nic Ma <[email protected]> * [DLMED] update accortding to comments Signed-off-by: Nic Ma <[email protected]> * [DLMED] remove image_only in Spacing and Orientation Signed-off-by: Nic Ma <[email protected]>

Signed-off-by: am <am>

Signed-off-by: Dong Yang <[email protected]>

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] add TorchVisionClassificationModel Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>

* Add parameter unpacking for transforms Signed-off-by: Sebastian Penhouet <[email protected]>

Signed-off-by: Nic Ma <[email protected]>

wyli and others added 30 commits April 3, 2021 13:24

skip warp tests before torch 18 (#1927)

e871ee3

Signed-off-by: Wenqi Li <[email protected]>

update docstrings (#1931)

e80cc4a

Signed-off-by: Wenqi Li <[email protected]>

update get_package_version (#1930)

30523c0

Signed-off-by: Wenqi Li <[email protected]>

enhance min/exact version check (#1937)

23f98f3

fixes ThreadDataLoader (#1945)

baf1bec

Signed-off-by: Wenqi Li <[email protected]>

fixes itk dep. version (#1944)

a6b8f2a

Signed-off-by: Wenqi Li <[email protected]>

Add progress bar to LesionFROC (#1951)

fbce3c2

Signed-off-by: Behrooz <[email protected]>

pipeline for releasing the docker images (#1953)

501026b

* adds docker tag action Signed-off-by: Wenqi Li <[email protected]> * adds tag info Signed-off-by: Wenqi Li <[email protected]> * update versioneer Signed-off-by: Wenqi Li <[email protected]>

remove unused RandomizableTransform (#1952)

81cfbf0

Signed-off-by: Wenqi Li <[email protected]>

1956 - docker image building pipelines (#1957)

5c411d1

* refactor docker building Signed-off-by: Wenqi Li <[email protected]>

Update garbage collection assertion (#1959)

d6ed956

* Update garbage collection assertion to a more reliable one Signed-off-by: Behrooz <[email protected]> * Remove print Signed-off-by: Behrooz <[email protected]>

Working ParameterScheduler (#1949)

7581255

* Working ParameterScheduler Added a new ParameterScheduler handler and the required tests. Signed-off-by: Petru-Daniel Tudosiu <[email protected]>

[DLMED] remove warning (#1962)

baca6e0

Signed-off-by: Nic Ma <[email protected]>

1965 - register_backward_hook (#1966)

8cbd59a

* fixes #1965 Signed-off-by: Wenqi Li <[email protected]> * adds docstring Signed-off-by: Wenqi Li <[email protected]>

1968 Enhance meta data doc-string in SegmentationSaver (#1969)

d56c002

* [DLMED] enhance doc-strings Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>

1889 - changelog for v0.5.0 (#1923)

3a7cd46

* changelog for 0.5.0 Signed-off-by: Wenqi Li <[email protected]> * update changelog Signed-off-by: Wenqi Li <[email protected]>

wyli and others added 29 commits June 16, 2021 08:54

2380 fix inverse bug of CenterScaleCropd transform (#2383)

6e65fe6

* [DLMED] add unit tests Signed-off-by: Nic Ma <[email protected]> * [MONAI] python code formatting Signed-off-by: monai-bot <[email protected]> Co-authored-by: monai-bot <[email protected]>

Fix and enhance wrong doc-strings of all batch_transform and `outpu…

82fc4c1

…t_transform` (#2384) * [DLMED] enhance all doc-string of handlers Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>

[DLMED] drop inheritance for future inverse feature (#2385)

4d9e8aa

Signed-off-by: Nic Ma <[email protected]>

temp. skip pytype on macos (#2392)

2f1afa8

Signed-off-by: Wenqi Li <[email protected]>

[DLMED] add missing arg detach (#2393)

f3f9584

Signed-off-by: Nic Ma <[email protected]>

2390 Add docstring for not nans (#2395)

b829fe9

* update not nan docstring Signed-off-by: Yiheng Wang <[email protected]> * fix black error Signed-off-by: Yiheng Wang <[email protected]> * Fix indentation errors Signed-off-by: Yiheng Wang <[email protected]>

JIT compiled gaussian mixture model (GMM) (#1802)

67e68f6

* initial gmm commit Signed-off-by: charliebudd <[email protected]>

fixes loader (#2398)

162b54a

jit Signed-off-by: Wenqi Li <[email protected]>

fixes jit concurrent build (#2405)

b653799

Signed-off-by: Wenqi Li <[email protected]>

Add blossom pre-merge pipeline (21/June) (#2382)

fb7d9f1

* Add blossom pre-merge pipeline Signed-off-by: Mohammad Adil <[email protected]>

Add min tests cmd to runtests script (#2400)

8cda6c1

* [DLMED] add min tests command Signed-off-by: Nic Ma <[email protected]> * [DLMED] update CI script Signed-off-by: Nic Ma <[email protected]>

fixes concurrency group (#2409)

0bd312a

Signed-off-by: Wenqi Li <[email protected]>

Spike (Herringbone) artifact transform (#2337)

88fe0fc

* added spikes transform Signed-off-by: Yaniel Cabrera <[email protected]>

2420 Add image_only option to several spatial transforms (#2421)

a0afa60

* [DLMED] add image_only and unit tests Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix flake8 issue Signed-off-by: Nic Ma <[email protected]>

2415 - add json config model support for mmar loading (#2416)

ea028f5

* add json config model support Signed-off-by: Wenqi Li <[email protected]> * update based on comments Signed-off-by: Wenqi Li <[email protected]>

Brain MMAR pretrained examples (#2406)

855a025

Signed-off-by: am <am>

add model desc for liver and pancreas seg (#2431)

5ff1bba

Signed-off-by: Dong Yang <[email protected]>

[DLMED] enhance docs (#2429)

c20f70b

Signed-off-by: Nic Ma <[email protected]>

Fix permissions for blossom CI (#2438)

0662ed2

2407 Add support to set number classes for TorchVision models (#2408)

79b83d9

* [DLMED] add TorchVisionClassificationModel Signed-off-by: Nic Ma <[email protected]> Co-authored-by: monai-bot <[email protected]>

Add parameter unpacking for transforms (#2437)

38403bb

* Add parameter unpacking for transforms Signed-off-by: Sebastian Penhouet <[email protected]>

[DLMED] enhance assert (#2444)

05b2da6

Signed-off-by: Nic Ma <[email protected]>

Nic-Ma merged commit bf4d7e5 into Nic-Ma:fix-inplace-shuffle-smartcache Jun 25, 2021

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merge master#148

merge master#148
Nic-Ma merged 388 commits intoNic-Ma:fix-inplace-shuffle-smartcachefrom
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Nic-Ma commented Jun 25, 2021

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