Stats commands: Clarify non-stationarity correction in help pages#2440
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Stats commands: Clarify non-stationarity correction in help pages#2440
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fod2fixel: Wipe transform / spacing info from fixel data files
Observed to be necessary to permit .sif file to be utilised directly as executable rather than explicitly invoking through singularity command.
…_line_option add two new command lines option in mrview for tractogram
For help page interfaces of algorithmm module wrapper scripts, do not insert the prospect of command-line options in between the wrapper name and the algorithm selection, as such usage will not work. As reported in #2292.
In instances where the input data contain non-finite values (regardless of whether or not such data are excluded from statistical inference via a mask), and at least one F-test is performed, writing the absolute and standardised effect size as NaN (as such cannot be meaningfully calculated for an F-test) was incorrectly indexed, leading to a segmentation fault.
mrview: fix glitch in handling of clip plane selection
Fix help page for algorithm module
GLM: Fix all_stats() segfault
more verbose error messages in population_template
mrregister: fix lmax check for nonlinear multi contrast registration
Conflicts: .github/workflows/checks.yml lib/mrtrix3/run.py
Master to dev
When importing data from / exporting data to phase encoding tables (whether in a basic tabular format or in the FSL eddy config / index format), potential axis permutation / flipping on image load / save needs to be taken into account, just as it is done when such data are stored in JSON files. Addresses #2306.
mrdegibbs: add 3D capability
README.md: Add Twitter reference
Documentation (Fixels and Dixels): double negative typo
This disables a lot of changes to allow compatibility with Python 2. These will be re-enabled on dev with a view to dropping Python 2 support in future releases.
Based on feedback in #2398.
minimal set of changes to pass pylint 2.11.1 tests
As mentioned in #2402, replace dead link with one to relevant wiki page on community forum
Fix link to advanced debugging help page
CONTRIBUTING.md: Revise text RE: target branch for docs changes
dev update
Denoising updates for 3.1.0
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Replaced with #3187. |
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Based on recent forum thread. Will eventually be evidenced in a publication, but with or without that, it's probably beneficial to clarify that "do more processing = better" is not necessarily true in this case.