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Hello,
Thanks for creating this great tool! When I run output.ipynb, the figures from parse_results_colour_chains and parse_results do not render in either VSCode or Jupyter notebook. I do get text in the below format when I run the cells, however no images are displayed. display_pae_plots renders just fine. I tried just utilizing py3Dmol outside of your function and appear to have the same issue. Do you need to install any additional dependencies or extensions to visualize the results of py3Dmol?
==> Parsing a PDB/mmCIF file: $PATH/ranked_0.pdb
==> Parsing a PDB/mmCIF file: $PATH/ranked_1.pdb
==> Parsing a PDB/mmCIF file: $PATH/ranked_2.pdb
==> Parsing a PDB/mmCIF file: $PATH/ranked_3.pdb
==> Parsing a PDB/mmCIF file: $PATH/ranked_4.pdb
Many thanks,
Laura
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