MacOS: numpy is throwing error with July 2023 authoritative spack merge #699
Description
Describe the bug
Using Dom's feature/merge_spack_develop_20230710 branches, spack-stack will now build on the Mac, but new test failures are introduced related to the py-numpy package. Here is a sample:
1: /Users/steveherbener/projects/DEVELOP/jedi-bundle/build/bin/nsidc_l4cdr_ice2ioda.py:40: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar.
1: datein = ncd.variables['time'][:] + 0.5
1: Reading file: testinput/nsidc_l4_icec.nc
1: Traceback (most recent call last):
1: File "/Users/steveherbener/projects/DEVELOP/jedi-bundle/build/bin/nsidc_l4cdr_ice2ioda.py", line 166, in <module>
1: main()
1: File "/Users/steveherbener/projects/DEVELOP/jedi-bundle/build/bin/nsidc_l4cdr_ice2ioda.py", line 154, in main
1: ice = Observation(args.input, args.thin, fdate)
1: File "/Users/steveherbener/projects/DEVELOP/jedi-bundle/build/bin/nsidc_l4cdr_ice2ioda.py", line 35, in __init__
1: self._read()
1: File "/Users/steveherbener/projects/DEVELOP/jedi-bundle/build/bin/nsidc_l4cdr_ice2ioda.py", line 40, in _read
1: datein = ncd.variables['time'][:] + 0.5
1: File "netCDF4/_netCDF4.pyx", line 4446, in netCDF4._netCDF4.Variable.__getitem__
1: File "netCDF4/_netCDF4.pyx", line 4511, in netCDF4._netCDF4.Variable._toma
1: File "/Users/steveherbener/spack-stack/envs/unified.spack-merge.mymacos/install/apple-clang/14.0.3/py-numpy-1.25.0-64heeas/lib/python3.10/site-packages/numpy/__init__.py", line 313, in __getattr__
1: raise AttributeError(__former_attrs__[attr])
1: AttributeError: module 'numpy' has no attribute 'bool'.
1: `np.bool` was a deprecated alias for the builtin `bool`. To avoid this error in existing code, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
1: The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
1: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
1/1 Test #1: test_iodaconv_nsidc_l4cdr_icec ...***Failed 0.63 sec
To Reproduce
On the Mac:
Build spack-stack using Dom's feature/merge_spack_develop_20230710 branches.
Then:
git clone https://github.com/jcsda-internal/jedi-bundle
cd jedi-bundle
mkdir build
cd build
ecbuild -DBUILD_IODA_CONVERTERS=ON -DPython3_EXECUTABLE=$(which python3) ..
make -j8
ctest
Expected behavior
numpy loads and executes successfully as before
System:
Mac, Ventura 13.5, apple [email protected], [email protected]
Additional context