Update igv for Apple Silicon#2110
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bartreardon merged 1 commit intoInstallomator:mainfrom Feb 10, 2025
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Jan 10, 2025
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```% utils/assemble.sh igv 2025-01-10 13:19:42 : REQ : igv : ################## Start Installomator v. 10.7beta, date 2025-01-10 2025-01-10 13:19:42 : INFO : igv : ################## Version: 10.7beta 2025-01-10 13:19:42 : INFO : igv : ################## Date: 2025-01-10 2025-01-10 13:19:42 : INFO : igv : ################## igv 2025-01-10 13:19:42 : DEBUG : igv : DEBUG mode 1 enabled. 2025-01-10 13:19:42 : DEBUG : igv : name=IGV 2025-01-10 13:19:42 : DEBUG : igv : appName=IGV_2.19.1.app 2025-01-10 13:19:42 : DEBUG : igv : type=zip 2025-01-10 13:19:42 : DEBUG : igv : archiveName= 2025-01-10 13:19:42 : DEBUG : igv : downloadURL=https://data.broadinstitute.org/igv/projects/downloads/2.19/IGV_MacApp_2.19.1_WithJava.zip 2025-01-10 13:19:42 : DEBUG : igv : curlOptions= 2025-01-10 13:19:42 : DEBUG : igv : appNewVersion=2.19.1 2025-01-10 13:19:42 : DEBUG : igv : appCustomVersion function: Not defined 2025-01-10 13:19:42 : DEBUG : igv : versionKey=CFBundleShortVersionString 2025-01-10 13:19:43 : DEBUG : igv : packageID= 2025-01-10 13:19:43 : DEBUG : igv : pkgName= 2025-01-10 13:19:43 : DEBUG : igv : choiceChangesXML= 2025-01-10 13:19:43 : DEBUG : igv : expectedTeamID=R787A9V6VV 2025-01-10 13:19:43 : DEBUG : igv : blockingProcesses= 2025-01-10 13:19:43 : DEBUG : igv : installerTool= 2025-01-10 13:19:43 : DEBUG : igv : CLIInstaller= 2025-01-10 13:19:43 : DEBUG : igv : CLIArguments= 2025-01-10 13:19:43 : DEBUG : igv : updateTool= 2025-01-10 13:19:43 : DEBUG : igv : updateToolArguments= 2025-01-10 13:19:43 : DEBUG : igv : updateToolRunAsCurrentUser= 2025-01-10 13:19:43 : INFO : igv : BLOCKING_PROCESS_ACTION=tell_user 2025-01-10 13:19:43 : INFO : igv : NOTIFY=success 2025-01-10 13:19:43 : INFO : igv : LOGGING=DEBUG 2025-01-10 13:19:43 : INFO : igv : LOGO=/System/Applications/App Store.app/Contents/Resources/AppIcon.icns 2025-01-10 13:19:43 : INFO : igv : Label type: zip 2025-01-10 13:19:43 : INFO : igv : archiveName: IGV.zip 2025-01-10 13:19:43 : INFO : igv : no blocking processes defined, using IGV as default 2025-01-10 13:19:43 : DEBUG : igv : Changing directory to /Users/hessf/Git/Installomator/build 2025-01-10 13:19:43 : INFO : igv : name: IGV, appName: IGV_2.19.1.app 2025-01-10 13:19:43.270 mdfind[57303:2175491] [UserQueryParser] Loading keywords and predicates for locale "en_US" 2025-01-10 13:19:43.270 mdfind[57303:2175491] [UserQueryParser] Loading keywords and predicates for locale "en" 2025-01-10 13:19:43.302 mdfind[57303:2175491] Couldn't determine the mapping between prefab keywords and predicates. 2025-01-10 13:19:43 : WARN : igv : No previous app found 2025-01-10 13:19:43 : WARN : igv : could not find IGV_2.19.1.app 2025-01-10 13:19:43 : INFO : igv : appversion: 2025-01-10 13:19:43 : INFO : igv : Latest version of IGV is 2.19.1 2025-01-10 13:19:43 : REQ : igv : Downloading https://data.broadinstitute.org/igv/projects/downloads/2.19/IGV_MacApp_2.19.1_WithJava.zip to IGV.zip 2025-01-10 13:19:43 : DEBUG : igv : No Dialog connection, just download 2025-01-10 13:19:48 : DEBUG : igv : File list: -rw-r--r-- 1 hessf staff 77M Jan 10 13:19 IGV.zip 2025-01-10 13:19:48 : DEBUG : igv : File type: IGV.zip: Zip archive data, at least v1.0 to extract, compression method=store 2025-01-10 13:19:48 : DEBUG : igv : curl output was: * Host data.broadinstitute.org:443 was resolved. * IPv6: (none) * IPv4: 69.173.68.137 * Trying 69.173.68.137:443... * Connected to data.broadinstitute.org (69.173.68.137) port 443 * ALPN: curl offers h2,http/1.1 * (304) (OUT), TLS handshake, Client hello (1): } [328 bytes data] * CAfile: /etc/ssl/cert.pem * CApath: none * (304) (IN), TLS handshake, Server hello (2): { [122 bytes data] * (304) (IN), TLS handshake, Unknown (8): { [10 bytes data] * (304) (IN), TLS handshake, Certificate (11): { [4817 bytes data] * (304) (IN), TLS handshake, CERT verify (15): { [264 bytes data] * (304) (IN), TLS handshake, Finished (20): { [52 bytes data] * (304) (OUT), TLS handshake, Finished (20): } [52 bytes data] * SSL connection using TLSv1.3 / AEAD-AES256-GCM-SHA384 / [blank] / UNDEF * ALPN: server did not agree on a protocol. Uses default. * Server certificate: * subject: C=US; ST=Massachusetts; O=The Broad Institute, Inc.; CN=data.broadinstitute.org * start date: Jun 26 00:00:00 2024 GMT * expire date: Jun 26 23:59:59 2025 GMT * subjectAltName: host "data.broadinstitute.org" matched cert's "data.broadinstitute.org" * issuer: C=US; O=Internet2; CN=InCommon RSA Server CA 2 * SSL certificate verify ok. * using HTTP/1.x > GET /igv/projects/downloads/2.19/IGV_MacApp_2.19.1_WithJava.zip HTTP/1.1 > Host: data.broadinstitute.org > User-Agent: curl/8.7.1 > Accept: */* > * Request completely sent off < HTTP/1.1 200 OK < Date: Fri, 10 Jan 2025 20:19:43 GMT < Server: Apache < Last-Modified: Thu, 05 Dec 2024 00:14:23 GMT < ETag: "4cdabcf-6287ac7cadae7" < Accept-Ranges: bytes < Content-Length: 80587727 < Access-Control-Allow-Origin: * < Access-Control-Allow-Methods: GET,POST,PUT,OPTIONS < Access-Control-Allow-Headers: RANGE, Cache-control, If-None-Match, Content-Type < Access-Control-Expose-Headers: Content-Length < Content-Type: application/zip < { [14920 bytes data] * Connection #0 to host data.broadinstitute.org left intact 2025-01-10 13:19:48 : DEBUG : igv : DEBUG mode 1, not checking for blocking processes 2025-01-10 13:19:48 : REQ : igv : Installing IGV 2025-01-10 13:19:48 : INFO : igv : Unzipping IGV.zip 2025-01-10 13:19:48 : INFO : igv : Verifying: /Users/hessf/Git/Installomator/build/IGV_2.19.1.app 2025-01-10 13:19:48 : DEBUG : igv : App size: 185M /Users/hessf/Git/Installomator/build/IGV_2.19.1.app 2025-01-10 13:19:48 : DEBUG : igv : Debugging enabled, App Verification output was: /Users/hessf/Git/Installomator/build/IGV_2.19.1.app: accepted source=Notarized Developer ID origin=Developer ID Application: THE BROAD INSTITUTE INC (R787A9V6VV) 2025-01-10 13:19:49 : INFO : igv : Team ID matching: R787A9V6VV (expected: R787A9V6VV ) 2025-01-10 13:19:49 : INFO : igv : Installing IGV version 2.19.1 on versionKey CFBundleShortVersionString. 2025-01-10 13:19:49 : DEBUG : igv : DEBUG mode 1 enabled, skipping remove, copy and chown steps 2025-01-10 13:19:49 : INFO : igv : Finishing... 2025-01-10 13:19:52 : INFO : igv : name: IGV, appName: IGV_2.19.1.app 2025-01-10 13:19:52.119 mdfind[57362:2175758] [UserQueryParser] Loading keywords and predicates for locale "en_US" 2025-01-10 13:19:52.120 mdfind[57362:2175758] [UserQueryParser] Loading keywords and predicates for locale "en" 2025-01-10 13:19:52.158 mdfind[57362:2175758] Couldn't determine the mapping between prefab keywords and predicates. 2025-01-10 13:19:52 : INFO : igv : App(s) found: /Users/hessf/Git/Installomator/build/IGV_2.19.1.app 2025-01-10 13:19:52 : WARN : igv : could not determine location of IGV_2.19.1.app 2025-01-10 13:19:52 : REQ : igv : Installed IGV, version 2.19.1 2025-01-10 13:19:52 : INFO : igv : notifying 2025-01-10 13:19:52 : DEBUG : igv : DEBUG mode 1, not reopening anything 2025-01-10 13:19:52 : REQ : igv : All done! 2025-01-10 13:19:52 : REQ : igv : ################## End Installomator, exit code 0 hessf@b22088 ~/Git/Installomator % arch -arch x86_64 utils/assemble.sh igv 2025-01-10 13:20:01 : REQ : igv : ################## Start Installomator v. 10.7beta, date 2025-01-10 2025-01-10 13:20:01 : INFO : igv : ################## Version: 10.7beta 2025-01-10 13:20:01 : INFO : igv : ################## Date: 2025-01-10 2025-01-10 13:20:01 : INFO : igv : ################## igv 2025-01-10 13:20:01 : DEBUG : igv : DEBUG mode 1 enabled. 2025-01-10 13:20:02 : DEBUG : igv : name=IGV 2025-01-10 13:20:02 : DEBUG : igv : appName=IGV_2.19.1.app 2025-01-10 13:20:02 : DEBUG : igv : type=zip 2025-01-10 13:20:02 : DEBUG : igv : archiveName= 2025-01-10 13:20:02 : DEBUG : igv : downloadURL=https://data.broadinstitute.org/igv/projects/downloads/2.19/IGV_MacAppIntel_2.19.1_WithJava.zip 2025-01-10 13:20:02 : DEBUG : igv : curlOptions= 2025-01-10 13:20:02 : DEBUG : igv : appNewVersion=2.19.1 2025-01-10 13:20:02 : DEBUG : igv : appCustomVersion function: Not defined 2025-01-10 13:20:02 : DEBUG : igv : versionKey=CFBundleShortVersionString 2025-01-10 13:20:02 : DEBUG : igv : packageID= 2025-01-10 13:20:02 : DEBUG : igv : pkgName= 2025-01-10 13:20:02 : DEBUG : igv : choiceChangesXML= 2025-01-10 13:20:02 : DEBUG : igv : expectedTeamID=R787A9V6VV 2025-01-10 13:20:02 : DEBUG : igv : blockingProcesses= 2025-01-10 13:20:02 : DEBUG : igv : installerTool= 2025-01-10 13:20:02 : DEBUG : igv : CLIInstaller= 2025-01-10 13:20:02 : DEBUG : igv : CLIArguments= 2025-01-10 13:20:02 : DEBUG : igv : updateTool= 2025-01-10 13:20:02 : DEBUG : igv : updateToolArguments= 2025-01-10 13:20:02 : DEBUG : igv : updateToolRunAsCurrentUser= 2025-01-10 13:20:02 : INFO : igv : BLOCKING_PROCESS_ACTION=tell_user 2025-01-10 13:20:02 : INFO : igv : NOTIFY=success 2025-01-10 13:20:02 : INFO : igv : LOGGING=DEBUG 2025-01-10 13:20:02 : INFO : igv : LOGO=/System/Applications/App Store.app/Contents/Resources/AppIcon.icns 2025-01-10 13:20:03 : INFO : igv : Label type: zip 2025-01-10 13:20:03 : INFO : igv : archiveName: IGV.zip 2025-01-10 13:20:03 : INFO : igv : no blocking processes defined, using IGV as default 2025-01-10 13:20:03 : DEBUG : igv : Changing directory to /Users/hessf/Git/Installomator/build 2025-01-10 13:20:03 : INFO : igv : name: IGV, appName: IGV_2.19.1.app 2025-01-10 13:20:03.223 mdfind[57498:2176511] [UserQueryParser] Loading keywords and predicates for locale "en_US" 2025-01-10 13:20:03.224 mdfind[57498:2176511] [UserQueryParser] Loading keywords and predicates for locale "en" 2025-01-10 13:20:03.267 mdfind[57498:2176511] Couldn't determine the mapping between prefab keywords and predicates. 2025-01-10 13:20:03 : INFO : igv : App(s) found: /Users/hessf/Git/Installomator/build/IGV_2.19.1.app 2025-01-10 13:20:03 : WARN : igv : could not determine location of IGV_2.19.1.app 2025-01-10 13:20:03 : INFO : igv : appversion: 2025-01-10 13:20:03 : INFO : igv : Latest version of IGV is 2.19.1 2025-01-10 13:20:03 : INFO : igv : IGV.zip exists and DEBUG mode 1 enabled, skipping download 2025-01-10 13:20:03 : DEBUG : igv : DEBUG mode 1, not checking for blocking processes 2025-01-10 13:20:03 : REQ : igv : Installing IGV 2025-01-10 13:20:03 : INFO : igv : Unzipping IGV.zip 2025-01-10 13:20:03 : INFO : igv : Verifying: /Users/hessf/Git/Installomator/build/IGV_2.19.1.app 2025-01-10 13:20:03 : DEBUG : igv : App size: 185M /Users/hessf/Git/Installomator/build/IGV_2.19.1.app 2025-01-10 13:20:04 : DEBUG : igv : Debugging enabled, App Verification output was: /Users/hessf/Git/Installomator/build/IGV_2.19.1.app: accepted source=Notarized Developer ID origin=Developer ID Application: THE BROAD INSTITUTE INC (R787A9V6VV) 2025-01-10 13:20:04 : INFO : igv : Team ID matching: R787A9V6VV (expected: R787A9V6VV ) 2025-01-10 13:20:04 : INFO : igv : Installing IGV version 2.19.1 on versionKey CFBundleShortVersionString. 2025-01-10 13:20:04 : DEBUG : igv : DEBUG mode 1 enabled, skipping remove, copy and chown steps 2025-01-10 13:20:04 : INFO : igv : Finishing... 2025-01-10 13:20:07 : INFO : igv : name: IGV, appName: IGV_2.19.1.app 2025-01-10 13:20:07.466 mdfind[57612:2176919] [UserQueryParser] Loading keywords and predicates for locale "en_US" 2025-01-10 13:20:07.466 mdfind[57612:2176919] [UserQueryParser] Loading keywords and predicates for locale "en" 2025-01-10 13:20:07.512 mdfind[57612:2176919] Couldn't determine the mapping between prefab keywords and predicates. 2025-01-10 13:20:07 : INFO : igv : App(s) found: /Users/hessf/Git/Installomator/build/IGV_2.19.1.app 2025-01-10 13:20:07 : WARN : igv : could not determine location of IGV_2.19.1.app 2025-01-10 13:20:07 : REQ : igv : Installed IGV, version 2.19.1 2025-01-10 13:20:07 : INFO : igv : notifying 2025-01-10 13:20:07 : DEBUG : igv : DEBUG mode 1, not reopening anything 2025-01-10 13:20:07 : REQ : igv : All done! 2025-01-10 13:20:07 : REQ : igv : ################## End Installomator, exit code 0```
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