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query --print_query behavior is confusing #358

@cmungall

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@cmungall
  • --print-query does not print, but instead writes to dosdp.out
  • If --print-query true, then --outfile file is silently ignored and there is no match tsv results.
    • This can be confusing if I say --outfile foo.tsv and there is an old copy of foo.tsv corresponding to different arguments
    • Ideally options would be monotonic or compose in intuitive ways

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