DBS-Pro Analysis

This pipeline analyses data sequencing data from DBS-Pro experiments for protein and PrEST quantification.

Setup

First, make sure conda is installed on your system.

• Clone the git repostory.

  git clone https://github.com/FrickTobias/DBS-Pro
  

• Create an environment and with required dependencies.

  conda env create -n dbspro -f environment.yml
  

• Activate the environment.

  conda activate dbspro
  

• Move to the git folder and install dbspro into you environment.

  cd DBS-Pro
  pip install -e .
  

Useage

Basic usage

bash DBS-Pro_automation.sh -t <threads> raw-reads.fq output-folder