Hello Thomas,
It depends a bit on how you installed FreshRSS, and also from which to which version you are upgrading. (Please note that I am right now in the process of releasing a new beta version, so today/tomorrow is a bit special).

There is a built-in upgrade system in the Web interface of FreshRSS. (But I was not the one developing this mechanism and I have never used it, so I am not sure of the details)
If you are familiar with git, it is also convenient. But you may have to keep a eye on the release notes if there are some things to do manually. If your current version is >= 1.0, then it should be fine.

Install:

git clone https://github.com/FreshRSS/FreshRSS.git

Update:

cd ./FreshRSS/
git reset --hard
git pull

Otherwise, override your files with the files of the new version, and do not delete your existing ./data/ directory. So "just overriding the files" should work in most cases. What is your problem, more precisely ?

Uh oh!

How to upgrade? #861

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