…-verify workflow (#837)

setup-mongodb now only supports mongodb 7 on windows runners
ankane/setup-mongodb@2d78f75

…olver-core (#805)

This prevents the warning "Standard Commons Logging discovery in action with spring-jcl: please remove commons-logging.jar from classpath in order to avoid potential conflicts"

* exclude commons-logging dependency from rdf-resource-resolver-core
* add comments in pom with reason for exclusion

* include root logger AppenderRef, so we only need to change the log level, when required
* rename test logging config file for clarity and conformance to log4j2 best practices

* todo for InstanceProperties

* improve logging for IndexSettingsService.getOrDefaults, so we can clearly see if settings come from db or defaults

* clear settings repository at start of ping.List_POST.res204_newEntry

This is actually a quick and dirty fix, following the same pattern as the other tests.
However, the underlying problem remains: if you rely on cleaning up the db before each test, as opposed to after each test, then you need to make sure *everything* is cleaned up.

* consistent naming of pom version properties (property name should match artifact id, so it is immediately clear which package the version is for)

* add pom version properties for checkstyle and spring-javaformat-checkstyle, to make sure all versions are defined in one place

* remove unused plugin.jacoco.version property from pom

* bump dependency versions

  - spring-boot-starter-parent 3.5.0 to 3.5.10
  - springdoc-openapi-starter-webmvc-ui 2.8.8 to 2.8.15
  - rdf4j-runtime (and related) 5.1.3 to 5.2.2
  - jjwt-api (and related) 0.12.6 to 0.13.0
  - git-commit-id-maven-plugin 9.0.1 to 9.0.2
  - checkstyle 10.25.0 to 13.0.0
  - spring-javaformat-checkstyle 0.0.46 to 0.0.47

Call OpenApiService.updateAllGenericPaths() after application is ready, by listening for ApplicationReadyEvent.
An alternative would be ContextRefreshedEvent, but ApplicationReadyEvent has clearer semantics.

Before, with @PostConstruct, the updateAllGenericPaths method got called *before* the resource-definitions were migrated, so the resource endpoints were missing until the app was restarted.