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Closes #913 Refactor xASL_im_ResampleLinearFair#922

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MichaelStritt merged 8 commits intodevelopfrom
optimization-#913_LinearFair
Nov 29, 2021
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Closes #913 Refactor xASL_im_ResampleLinearFair#922
MichaelStritt merged 8 commits intodevelopfrom
optimization-#913_LinearFair

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@MichaelStritt MichaelStritt commented Nov 15, 2021

Linked issue

Check out the issue description in #913.

How to test

If you run ExploreASL the function will already be used in the visualization settings e.g., but there are of course a lot of more refined test options. Loading a NIFTI and resampling it would be a good idea.

@MichaelStritt MichaelStritt linked an issue Nov 15, 2021 that may be closed by this pull request
xASL_im_ResampleLinearFair: simplify code #913
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@MichaelStritt MichaelStritt added the optimization Ensure that code runs faster with unchanged functionality label Nov 15, 2021
@MichaelStritt MichaelStritt self-assigned this Nov 15, 2021
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jan-petr
jan-petr requested changes Nov 16, 2021
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First - this will work for 1D and 3D changes, but resampling in 2D will be skipped. I fixed that. But this function simply has to be replaced by interp3+ngrid instead of having this enormous thing...

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MichaelStritt commented Nov 17, 2021

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First - this will work for 1D and 3D changes, but resampling in 2D will be skipped. I fixed that. But this function simply has to be replaced by interp3+ngrid instead of having this enormous thing...

Correct, but that didn't work before either, right?

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We should be careful about not dividing by zero when one of the dimension is 1. So mainly input size or new size [X Y 1] should flip it to a 2D mode instead of a 3D mode. Inner dimensions being 1 is a problem as well, but no nice solution - perhaps there we simply calculate the Xq like a mean coordinate. Do you know what I mean?!

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@MichaelStritt MichaelStritt changed the title Refactor xASL_im_ResampleLinearFair Closes #913 Refactor xASL_im_ResampleLinearFair Nov 26, 2021
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I discussed this with Jan.

We revert the commits on xASL_im_ResampleLinearFair, and git mv this old function to the development folder, as we may use this later to improve motion correction in high resolution. (it might be faster to do this in a new branch to keep history clean)

Good idea then to create this new function called ResampleLinear and use this instead of ResampleLinearFair.

Again, nice work!

@MichaelStritt MichaelStritt force-pushed the optimization-#913_LinearFair branch from 192187e to c3ee8a8 Compare November 26, 2021 13:00
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MichaelStritt commented Nov 26, 2021

I discussed this with Jan.

We revert the commits on xASL_im_ResampleLinearFair, and git mv this old function to the development folder, as we may use this later to improve motion correction in high resolution. (it might be faster to do this in a new branch to keep history clean)

Good idea then to create this new function called ResampleLinear and use this instead of ResampleLinearFair.

Again, nice work!

Sounds good, I cleaned it up. Should have nice individual commits for each file now and it's less convoluted.

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OK.

@MichaelStritt MichaelStritt force-pushed the optimization-#913_LinearFair branch from 5fb66e6 to e20326b Compare November 29, 2021 11:11
@MichaelStritt MichaelStritt merged commit e20326b into develop Nov 29, 2021
@MichaelStritt MichaelStritt deleted the optimization-#913_LinearFair branch November 29, 2021 11:11
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xASL_im_ResampleLinearFair: simplify code

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