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Fixes #759 Adapting xASL to multi-PLD#871

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MDijsselhof merged 11 commits intodevelopfrom
feature-#759_AdaptingxASLToMultiPLD
Nov 19, 2021
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Fixes #759 Adapting xASL to multi-PLD#871
MDijsselhof merged 11 commits intodevelopfrom
feature-#759_AdaptingxASLToMultiPLD

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@MDijsselhof MDijsselhof commented Oct 4, 2021

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closes #759

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@MDijsselhof MDijsselhof linked an issue Oct 4, 2021 that may be closed by this pull request
Adapting ExploreASL pipeline to multi-PLD data #759
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@MDijsselhof MDijsselhof requested a review from jan-petr October 4, 2021 15:54
@MichaelStritt MichaelStritt changed the title Feature #759 adaptingx asl to multi pld Fixes #759 Adaptingx ASL to multi-PLD Oct 4, 2021
@MichaelStritt MichaelStritt changed the title Fixes #759 Adaptingx ASL to multi-PLD Fixes #759 Adapting xASL to multi-PLD Oct 4, 2021
@MichaelStritt MichaelStritt added the feature New feature, enhancement or request label Oct 4, 2021
MichaelStritt
MichaelStritt reviewed Oct 4, 2021
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MichaelStritt
MichaelStritt reviewed Oct 4, 2021
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@MichaelStritt MichaelStritt self-requested a review October 4, 2021 16:45
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MichaelStritt approved these changes Oct 4, 2021
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I only found minor stuff. Please check my comments and wait for @jan-petr's review. Nice work 👍

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jan-petr requested changes Oct 4, 2021
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Very good - almost there. Most of my comments are really minor to improve the code quality. But there are 1-2 bugs and 1-2 important things to discuss.

@MichaelStritt MichaelStritt requested a review from jan-petr October 4, 2021 19:24
HenkMutsaerts
HenkMutsaerts requested changes Oct 5, 2021
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Sorry this is a big change so will get lots of comments. Hoge bomen vangen veel wind ;)

jan-petr
jan-petr requested changes Oct 5, 2021
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MDijsselhof commented Oct 5, 2021

@jan-petr Apparently I can't comment if someone requests changes so I'll just write it down here.
Regarding the x.Q.bUseBasilQuantification: is this fine the way it is now? I don't follow.
Regarding the x struct: this was required to output qCBF_Basil.nii and relatable paths, however if we change all paths back to the original qCBF.nii this is not required anymore. Does that work for you?

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jan-petr approved these changes Oct 12, 2021
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All good now.

@MDijsselhof MDijsselhof force-pushed the feature-#759_AdaptingxASLToMultiPLD branch from 06389af to dae7460 Compare November 19, 2021 10:46
MichaelStritt and others added 4 commits November 19, 2021 12:07
@MichaelStritt @MDijsselhof
#759 Minor optimizations
874cd80 
I tried to help with some of Jans review comments. Still not everything is done. Cheers, Michael.
@MDijsselhof
#759 review requested changes
8ef03b5
@BeatrizPadrela @MDijsselhof
#759 Default conditions - minor changes
1eec167
@jan-petr @MDijsselhof
#759 Minor optimization
12cc7d6
@MDijsselhof MDijsselhof force-pushed the feature-#759_AdaptingxASLToMultiPLD branch from dae7460 to 12cc7d6 Compare November 19, 2021 11:08
@MDijsselhof MDijsselhof merged commit 12cc7d6 into develop Nov 19, 2021
@MichaelStritt MichaelStritt deleted the feature-#759_AdaptingxASLToMultiPLD branch November 19, 2021 11:10
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@HenkMutsaerts HenkMutsaerts HenkMutsaerts approved these changes

@jan-petr jan-petr jan-petr approved these changes

@BeatrizPadrela BeatrizPadrela BeatrizPadrela approved these changes

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@MichaelStritt MichaelStritt MichaelStritt approved these changes

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Adapting ExploreASL pipeline to multi-PLD data

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