BASIL is working perfectly, so it is running for multiPLD (ASL_2 for DEBBIE)

Okay, so between step 3 and step4 (where we do spatial regularization) the maps become weird, the FTISS output from FSL (used later on to obtain CBF.nii by dividing it by M0) becomes weird:

[step3]

[step4]

But this doesn't mean there's some kind of error, I think that all is working very well, maybe we just need to turn off the bSpai

Okay, for fabber quantification, it was giving this error:

So, comparing to an older branch (#927), I realised that the fabber command line should be as simple as 'fabber_asl -@ txt_path ' and then all of the options should be inside the txt, including the output path and the PWI input path as well. I've now added a new input to the xASL_sub_FSLOptions:

... so that we can have these two commands inside the txt file:

Additionally, since we don't need nothing else than this orange command line, we can define these cmdlineOptions (in green) only for non-Fabber quantification: