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General BIDSifying function

optimizationEnsure that code runs faster with unchanged functionalityEnsure that code runs faster with unchanged functionality

Status: Open.

#904 In ExploreASL/ExploreASL;

· MichaelStritt opened on Nov 12, 2021

BIDS nomenclature

documentationImprovements or additions to documentationImprovements or additions to documentation

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#601 In ExploreASL/ExploreASL;

· MichaelStritt opened on May 27, 2021

Output should always be a struct in xASL_bids_JsonCheck

bugSomething isn't workingSomething isn't working

minor improvementsFixes that don't change main pipeline functionalityFixes that don't change main pipeline functionality

Status: Open.

#694 In ExploreASL/ExploreASL;

· MichaelStritt opened on Jul 2, 2021

Rethink parts of NII2BIDS & bidsConfig

bidsMoving ExploreASL to BIDS compatibilityMoving ExploreASL to BIDS compatibility

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#752 In ExploreASL/ExploreASL;

· MichaelStritt opened on Aug 2, 2021

Rename subjects to BIDS format

bidsMoving ExploreASL to BIDS compatibilityMoving ExploreASL to BIDS compatibility

Status: Open.

#750 In ExploreASL/ExploreASL;

· MichaelStritt opened on Jul 30, 2021

xASL_initialize: Remove old paths when adding new paths

bugSomething isn't workingSomething isn't working

Status: Open.

#192 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Oct 28, 2020

BIDS for post-contrast T1w

bidsMoving ExploreASL to BIDS compatibilityMoving ExploreASL to BIDS compatibility

Status: Open.

#359 In ExploreASL/ExploreASL;

· jan-petr opened on Feb 23, 2021

Harmonise xASL parameters with BIDS

bidsMoving ExploreASL to BIDS compatibilityMoving ExploreASL to BIDS compatibility

featureNew feature, enhancement or requestNew feature, enhancement or request

importRelated to data import moduleRelated to data import module

Status: Open.

#164 In ExploreASL/ExploreASL;

· jan-petr opened on Sep 28, 2020

BIDS - automatic correction of the AP-PA for M0

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#534 In ExploreASL/ExploreASL;

· jan-petr opened on May 3, 2021

Add bBiasfieldCorrectionFLAIR

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#47 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Jul 21, 2020

ASL_wrp_CreatePopulationTemplates - large population size accomodation

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#259 In ExploreASL/ExploreASL;

· MauricePasternak opened on Jan 8, 2021

CSF warning CAT12

bugSomething isn't workingSomething isn't working

Status: Open.

#185 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Oct 15, 2020

Correct import of Control/label order

bidsMoving ExploreASL to BIDS compatibilityMoving ExploreASL to BIDS compatibility

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#232 In ExploreASL/ExploreASL;

· jan-petr opened on Nov 25, 2020

Separate SliceReadouTime for ASL and M0 in x-struct

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#417 In ExploreASL/ExploreASL;

· jan-petr opened on Mar 12, 2021

MIP of T1w (and other images)

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#634 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Jun 9, 2021

Throw warning when dataPar contains similar context as sidecars

bidsMoving ExploreASL to BIDS compatibilityMoving ExploreASL to BIDS compatibility

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#644 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Jun 12, 2021

Merge xASL_io_CreateNifti & xASL_io_SaveNifti

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#668 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Jun 19, 2021

Improve T1 segmentation for running quality=0

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#682 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Jun 28, 2021

Allow Population module variable sessions per subject processing

featureNew feature, enhancement or requestNew feature, enhancement or request

outdated

Status: Open.

#501 In ExploreASL/ExploreASL;

· MDijsselhof opened on Apr 21, 2021

Add feedback on ExploreASL_Master input parameters

featureNew feature, enhancement or requestNew feature, enhancement or request

outdated

Status: Open.

#347 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Feb 18, 2021

Default all ROI output to NaNs rather than zeros

bugSomething isn't workingSomething isn't working

Status: Open.

#171 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Sep 29, 2020

Additional QC parameters

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#728 In ExploreASL/ExploreASL;

· MDijsselhof opened on Jul 15, 2021

Updating DCM2NII permissions

optimizationEnsure that code runs faster with unchanged functionalityEnsure that code runs faster with unchanged functionality

Status: Open.

#547 In ExploreASL/ExploreASL;

· jan-petr opened on May 6, 2021

Segmentation of T1w hypointensities

featureNew feature, enhancement or requestNew feature, enhancement or request

Status: Open.

#497 In ExploreASL/ExploreASL;

· HenkMutsaerts opened on Apr 14, 2021

Rename T2 and T1 to T2w and T1w

bidsMoving ExploreASL to BIDS compatibilityMoving ExploreASL to BIDS compatibility

Status: Open.

#389 In ExploreASL/ExploreASL;

· jan-petr opened on Mar 2, 2021