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bidsMoving ExploreASL to BIDS compatibilityMoving ExploreASL to BIDS compatibilityfeatureNew feature, enhancement or requestNew feature, enhancement or request
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Description
Description
Several quantification steps should be moved from the ASL module to the import module for BIDS compliance.
For this, we:
- Move code parts to specific functions;
- Call these functions both in import and ASL module (for legacy);
- Detect if ASL module should call these functions for ExploreASL version lower than 1.8.0
Requirements
- Scale slope correction
- Other vendor-specific scaling
- Automatic detection of control-label order (
xASL_quant_GetControlLabelOrder) - Dummy scan support (per Dummy volumes #748)
- Allow setting
"SliceTiming":"shortestTR"similar toSliceReadoutTime = 'shortestTR;'which would take the TR from eachASL.jsonsidecar (as it was set to minimal TR in the protocol), subtract PLD and LabelingDuration, and divide by (nSlices-1) to obtain theSliceReadoutTime, and then use this value to fill in theSliceTimingvector.
How to test
Optional: insert description about how to test the code changes here
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bidsMoving ExploreASL to BIDS compatibilityMoving ExploreASL to BIDS compatibilityfeatureNew feature, enhancement or requestNew feature, enhancement or request