This issue documents all the necessary steps to be taken to finalize full BIDS compatibility:

Flavors:
BIDS Canon protocol PDF Rui

BIDS United Imaging xjnew2017 [email protected] example & scan protocol

1. Make sure all relevant parameters are extracted from DICOMs
   • Master issue flavor processing #342
   • Phoenix protocol pre-processing in import #297
   • Update dcm2nii version #435
   • Bsup timing extraction from Bremen sequence #517
   • Siemens number of averages from Phoenix #1031
   • Import does not work with all MOSAICs #407
   • Separate SliceReadouTime for ASL and M0 in x-struct #417
   • Siemens Flavors from GSP #427
   • Philips Flavors from GSP #428
   • Load all BIDS fields DICOM #562
   • Incorrect use of dicominfo #705
   • Labeling efficiency for Danny JJ Wang's sequence #437
   • Correct BIDS fields of structural scans #571
   • Generation recommended BIDS fields #797
   • Scale factor 0 in xASL_bids_BIDSifyM0 #903
   • General BIDSifying function #904
   • Check ASLContext content during import #1004
   • Philips extra parameter import #231
   • Dummy volumes #748
   • Optimization of the import #755
   • Read Philips XX files, in Philips ASL DICOM2BIDS conversion #962
   • Existing derivatives/rawdata #916
   • Import input change from folders to SeriesDescription/ProtocolName #917
   • Legacy import issues #1093
   • Add dcm2nii flavors #1131
   • Vendor-specific DICOM field list #1215
   • New DICOM tags #1240
   • GE Private DICOM tag #1245
   • Philips Rescale Slope - More Locations #1280
2. Convert internal parameters to BIDS to avoid conversion all the time (list not complete)
   • Read M0-location from ASLcontext #1020
   • Revisiting visit/sessions/runs #775
   • Harmonise xASL parameters with BIDS #164
   • Change Vendor parameter to BIDS #1683
3. Change the file structure in derivatives to be closer to BIDS (list not complete)
   • Move TestDataSet repository to same format as FlavorDatabase #327
   • BIDS for post-contrast T1w #359
   • Rename T2 and T1 to T2w and T1w #389
   • Rename subjects to BIDS format #750
   • BIDS nomenclature #601
   • Rethink parts of NII2BIDS & bidsConfig #752
   • Visit name added in BIDS2Legacy #885
   • Make <ROOT> in xASL_Iteration BIDS compatible #915
   • Process data directly from rawdata #1066
   • Simplify the paths in x-struct #1067
   • What should happen with /Functions/BIDS/xASL_bids_CheckDatasetDescription.m? This file is currently not used. But will be used to check import across versions.
4. Move all data-related stuff from quantification to import (scale slopes, timings etc) (list not complete)
   • Correct import of Control/label order #232
   • GE scalings should be applied in import #604
   • Siemens scalings are applied in the import #605
   • Move quantification specifics to import #738
   • Recognize Siemens sequence with M0 scaling factor #429
   • Automatic detection and use of CCCCLLLL and LLLLCCC order #862
5. Prepare a good derivatives structure (list not complete)
   • List incomplete...
6. Direct reading from rawdata (list not complete)
   • Dicom2BIDS ASL App #265